Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BVAD3_RS19690 Genome accession   NZ_AP024501
Coordinates   4034106..4034624 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain AD-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4014549..4034951 4034106..4034624 within 0


Gene organization within MGE regions


Location: 4014549..4034951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVAD3_RS19570 (BVAD3_39020) - 4014549..4014845 (-) 297 WP_341474958.1 NUDIX domain-containing protein -
  BVAD3_RS19575 (BVAD3_39030) - 4014860..4015312 (-) 453 WP_014419371.1 hypothetical protein -
  BVAD3_RS19580 (BVAD3_39040) - 4015617..4016162 (+) 546 WP_014419372.1 hypothetical protein -
  BVAD3_RS19585 (BVAD3_39050) - 4016291..4016749 (-) 459 WP_014419373.1 hypothetical protein -
  BVAD3_RS19590 (BVAD3_39060) - 4016812..4017597 (-) 786 WP_014419374.1 SAR2788 family putative toxin -
  BVAD3_RS19595 (BVAD3_39070) - 4017612..4018601 (-) 990 WP_022554051.1 S8 family peptidase -
  BVAD3_RS21235 - 4018993..4019131 (+) 139 Protein_3839 DUF255 domain-containing protein -
  BVAD3_RS19605 (BVAD3_39080) - 4019177..4020625 (-) 1449 WP_207169039.1 PLP-dependent aminotransferase family protein -
  BVAD3_RS19610 (BVAD3_39090) - 4020754..4021635 (+) 882 WP_103526399.1 EamA family transporter -
  BVAD3_RS19615 (BVAD3_39100) - 4021773..4022750 (+) 978 WP_021494599.1 HD domain-containing protein -
  BVAD3_RS19620 (BVAD3_39110) - 4022963..4023439 (-) 477 WP_021494598.1 DUF4944 domain-containing protein -
  BVAD3_RS19625 (BVAD3_39120) - 4023706..4023873 (+) 168 Protein_3844 DUF255 domain-containing protein -
  BVAD3_RS19630 (BVAD3_39130) - 4024035..4024847 (+) 813 WP_048367898.1 MerR family transcriptional regulator -
  BVAD3_RS19635 (BVAD3_39140) - 4024916..4025605 (+) 690 WP_049627734.1 DUF554 domain-containing protein -
  BVAD3_RS21400 (BVAD3_39150) - 4025752..4025907 (+) 156 Protein_3847 DUF255 domain-containing protein -
  BVAD3_RS19645 (BVAD3_39160) - 4025943..4027832 (+) 1890 WP_144624744.1 thioredoxin domain-containing protein -
  BVAD3_RS19650 (BVAD3_39170) - 4027829..4028725 (-) 897 WP_021494596.1 CPBP family intramembrane glutamic endopeptidase -
  BVAD3_RS19655 (BVAD3_39180) - 4028940..4030271 (+) 1332 WP_014419380.1 MFS transporter -
  BVAD3_RS19660 (BVAD3_39190) - 4030303..4030683 (-) 381 WP_121692583.1 VOC family protein -
  BVAD3_RS19665 - 4030740..4031679 (-) 940 Protein_3852 LacI family DNA-binding transcriptional regulator -
  BVAD3_RS19670 (BVAD3_39220) xth 4031742..4032500 (-) 759 WP_025650115.1 exodeoxyribonuclease III -
  BVAD3_RS19675 (BVAD3_39230) - 4032497..4033054 (-) 558 WP_029973046.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  BVAD3_RS19680 (BVAD3_39240) - 4033051..4033632 (-) 582 WP_128497049.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  BVAD3_RS19685 (BVAD3_39250) rpsR 4033823..4034062 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  BVAD3_RS19690 (BVAD3_39260) ssbA 4034106..4034624 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  BVAD3_RS19695 (BVAD3_39270) rpsF 4034664..4034951 (-) 288 WP_004392977.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=85468 BVAD3_RS19690 WP_004392979.1 4034106..4034624(-) (ssbA) [Bacillus velezensis strain AD-3]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=85468 BVAD3_RS19690 WP_004392979.1 4034106..4034624(-) (ssbA) [Bacillus velezensis strain AD-3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment