Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QYT34_RS06640 Genome accession   NZ_CP129555
Coordinates   1278468..1278971 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain 614E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1278468..1298090 1278468..1278971 within 0


Gene organization within MGE regions


Location: 1278468..1298090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT34_RS06640 (QYT34_06615) ssbA 1278468..1278971 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  QYT34_RS06645 (QYT34_06620) rpsR 1279023..1279265 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  QYT34_RS06650 (QYT34_06625) - 1279497..1280216 (-) 720 WP_000400841.1 type II toxin-antitoxin system PemK/MazF family toxin -
  QYT34_RS06655 (QYT34_06630) - 1280329..1281543 (-) 1215 WP_000270135.1 tyrosine-type recombinase/integrase -
  QYT34_RS06660 (QYT34_06635) - 1281704..1282327 (-) 624 WP_000230361.1 helix-turn-helix domain-containing protein -
  QYT34_RS06665 (QYT34_06640) - 1282476..1282640 (+) 165 WP_001611932.1 helix-turn-helix domain-containing protein -
  QYT34_RS06670 (QYT34_06645) - 1282641..1282913 (+) 273 WP_001138305.1 helix-turn-helix domain-containing protein -
  QYT34_RS06675 (QYT34_06650) - 1282925..1283098 (+) 174 WP_000784892.1 hypothetical protein -
  QYT34_RS06680 (QYT34_06655) - 1283065..1283268 (+) 204 WP_001231376.1 hypothetical protein -
  QYT34_RS06685 (QYT34_06660) - 1283270..1283653 (+) 384 WP_000403837.1 hypothetical protein -
  QYT34_RS06690 (QYT34_06665) tscT 1283654..1283980 (+) 327 WP_001103967.1 type II toxin-antitoxin system toxin TscT -
  QYT34_RS06695 (QYT34_06670) - 1284045..1284914 (+) 870 WP_001002709.1 primase alpha helix C-terminal domain-containing protein -
  QYT34_RS06700 (QYT34_06675) - 1284928..1286637 (+) 1710 WP_000447468.1 DUF927 domain-containing protein -
  QYT34_RS06705 (QYT34_06680) - 1286947..1287327 (+) 381 WP_000356942.1 hypothetical protein -
  QYT34_RS06710 (QYT34_06685) - 1287324..1287965 (+) 642 WP_001019762.1 hypothetical protein -
  QYT34_RS06715 (QYT34_06690) - 1288673..1289017 (+) 345 WP_001288442.1 hypothetical protein -
  QYT34_RS06720 (QYT34_06695) - 1289048..1289701 (+) 654 WP_000214170.1 hypothetical protein -
  QYT34_RS06725 (QYT34_06700) - 1289754..1290281 (+) 528 WP_000771361.1 spore coat protein -
  QYT34_RS06730 (QYT34_06705) - 1290413..1290625 (+) 213 WP_001656917.1 hypothetical protein -
  QYT34_RS06735 (QYT34_06710) - 1290622..1291191 (+) 570 WP_001293071.1 terminase small subunit -
  QYT34_RS06740 (QYT34_06720) - 1291468..1292436 (+) 969 WP_000801980.1 Abi family protein -
  QYT34_RS06745 (QYT34_06725) - 1292578..1293015 (+) 438 WP_073392942.1 DUF3102 domain-containing protein -
  QYT34_RS06750 (QYT34_06730) - 1293133..1293645 (+) 513 WP_000813311.1 hypothetical protein -
  QYT34_RS06755 (QYT34_06735) - 1293661..1293840 (+) 180 WP_000797954.1 hypothetical protein -
  QYT34_RS06760 (QYT34_06740) - 1294604..1295611 (-) 1008 WP_001080636.1 Abi family protein -
  QYT34_RS06765 (QYT34_06745) - 1295617..1296331 (-) 715 Protein_1289 tyrosine-type recombinase/integrase -
  QYT34_RS06770 (QYT34_06750) - 1296568..1296936 (+) 369 WP_000849155.1 YxeA family protein -
  QYT34_RS06775 (QYT34_06755) - 1297117..1297689 (+) 573 WP_000769723.1 PepSY domain-containing protein -
  QYT34_RS06780 (QYT34_06760) - 1297827..1298090 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=854253 QYT34_RS06640 WP_000934799.1 1278468..1278971(+) (ssbA) [Staphylococcus aureus strain 614E]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=854253 QYT34_RS06640 WP_000934799.1 1278468..1278971(+) (ssbA) [Staphylococcus aureus strain 614E]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365