Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V6U70_RS02165 Genome accession   NZ_CP145868
Coordinates   415117..416076 (+) Length   319 a.a.
NCBI ID   WP_410532638.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 410117..421076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS02155 (V6U70_02155) - 410461..412398 (+) 1938 WP_410532636.1 GbpC/Spa domain-containing protein -
  V6U70_RS02160 (V6U70_02160) - 412469..413718 (-) 1250 Protein_377 ISL3 family transposase -
  V6U70_RS02165 (V6U70_02165) coiA 415117..416076 (+) 960 WP_410532638.1 competence protein CoiA Machinery gene
  V6U70_RS02170 (V6U70_02170) pepF 416087..417892 (+) 1806 WP_410532640.1 oligoendopeptidase F Regulator
  V6U70_RS02175 (V6U70_02175) - 418104..419324 (+) 1221 WP_048790172.1 OFA family MFS transporter -
  V6U70_RS02180 (V6U70_02180) - 419396..420103 (+) 708 WP_014633986.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38004.81 Da        Isoelectric Point: 9.0848

>NTDB_id=854039 V6U70_RS02165 WP_410532638.1 415117..416076(+) (coiA) [Streptococcus salivarius strain KSS12]
MLIAKNPEGKLVSALETELNREETYCCPGCQGRVLLRQGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVRIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLCFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWSLTENLMTVLRFPYQAEQVETYQVTQRKRVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKLFKQYYRKRHFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=854039 V6U70_RS02165 WP_410532638.1 415117..416076(+) (coiA) [Streptococcus salivarius strain KSS12]
GTGTTAATTGCAAAAAATCCGGAAGGGAAATTGGTTTCAGCACTTGAAACTGAGTTAAATCGCGAGGAAACTTATTGTTG
TCCAGGTTGTCAAGGTAGAGTCCTATTGAGGCAGGGGCAGGTAATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCCTTATATAAATCTTTGGTTAACCATGGT
GAAAAAGTACGTATTGAAAAGGTTTTGTCCGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGGTTATCCCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGTCGTTTAACAGACCTACAGCGGGACTTTCTCTGTTTTACGGCTAAGATA
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCCTGGTCGTTAACCGAAAATCTCATGACCGTTTTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTAACTCAGCGAAAGAGGGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAAGAAGCCTATCTTAAGGGAATGAATTTGTTATGCTTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCAGAATCTAAGCAAGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTAAGCAATATTACC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(3-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.338

97.492

0.442
  coiA Streptococcus pneumoniae D39

45.338

97.492

0.442
  coiA Streptococcus pneumoniae R6

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

44.695

97.492

0.436
  coiA Lactococcus lactis subsp. cremoris KW2

35.455

100

0.367