Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   V6U70_RS01750 Genome accession   NZ_CP145868
Coordinates   332262..332924 (+) Length   220 a.a.
NCBI ID   WP_410532594.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327262..337924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS01725 (V6U70_01725) - 327600..328310 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  V6U70_RS01730 (V6U70_01730) - 328445..329104 (+) 660 WP_002890017.1 CBS and ACT domain-containing protein -
  V6U70_RS01735 (V6U70_01735) cysK 329253..330179 (-) 927 WP_002883742.1 cysteine synthase A -
  V6U70_RS01740 (V6U70_01740) - 330281..330907 (-) 627 WP_021143583.1 YigZ family protein -
  V6U70_RS01745 (V6U70_01745) comFA/cflA 330962..332281 (+) 1320 WP_410532592.1 DEAD/DEAH box helicase Machinery gene
  V6U70_RS01750 (V6U70_01750) comFC/cflB 332262..332924 (+) 663 WP_410532594.1 ComF family protein Machinery gene
  V6U70_RS01755 (V6U70_01755) hpf 333003..333551 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26159.49 Da        Isoelectric Point: 8.8866

>NTDB_id=854034 V6U70_RS01750 WP_410532594.1 332262..332924(+) (comFC/cflB) [Streptococcus salivarius strain KSS12]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNNLKPFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTRKERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=854034 V6U70_RS01750 WP_410532594.1 332262..332924(+) (comFC/cflB) [Streptococcus salivarius strain KSS12]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGACATAAAAAA
TAATTTAAAACCATTTTTTAAAAAAGGTTATACCATAGTGCCGGTCCCATTGTCGGAAGAACGCTTGGTAGAAAGAGGAT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCAAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTAGATGATATCTATACAACAGGATCTACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGTTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.946

100

0.464
  comFC/cflB Streptococcus mitis SK321

45.495

100

0.459
  comFC/cflB Streptococcus pneumoniae Rx1

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

45.045

100

0.455