Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   QYM01_RS08570 Genome accession   NZ_CP129527
Coordinates   1791086..1792585 (-) Length   499 a.a.
NCBI ID   WP_301899622.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1786086..1797585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS08545 (QYM01_08545) - 1787341..1787487 (-) 147 Protein_1648 DUF4176 domain-containing protein -
  QYM01_RS08550 (QYM01_08550) - 1787480..1788040 (+) 561 Protein_1649 IS30 family transposase -
  QYM01_RS08555 (QYM01_08555) amiF 1788165..1789088 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  QYM01_RS08560 (QYM01_08560) amiE 1789081..1790151 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  QYM01_RS08565 (QYM01_08565) amiD 1790160..1791086 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  QYM01_RS08570 (QYM01_08570) amiC 1791086..1792585 (-) 1500 WP_301899622.1 ABC transporter permease Regulator
  QYM01_RS08575 (QYM01_08575) amiA3 1792649..1794625 (-) 1977 WP_301899623.1 peptide ABC transporter substrate-binding protein Regulator
  QYM01_RS08580 (QYM01_08580) pbp3 1794933..1796171 (+) 1239 WP_301899624.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55664.13 Da        Isoelectric Point: 10.1102

>NTDB_id=854015 QYM01_RS08570 WP_301899622.1 1791086..1792585(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MKKYIFERILRSLVSILLVTALTYTIVFTLVPKSLIFKQDPNYNKMVTTPDKKTNYLNTVFENMGYISYYSSKELQNKAS
KLDPAVTTTPTKANEKIYQKYIASIGNGWKLGRFTESKGFYAVREIPIYERVWNFFSHLVVIDHPWKIKDPKNPNLERYV
RPEIDPAVGPALVGSGTKHKYLIYFNKQFPFIHQNIITFDLGVSYPTYANIPVVQVITQGQGRTLQKEVTFPTGKTKLSS
IDIYSRTYKTPSSLDSKDIANFGKGDAYTNTQNNYAEPSMIANSFKIGIVGVLLSYLFGLPIGMLMAYYKNGWFDRFSTA
ATTFMLALPSIALIYIVRFVGSYLGLPDTFPLLGAGDVRSYVLPALILGILGTPSTVVWFRRYIVDLQGSDFVRFARAKG
LSEFEISKNHLFKQAMVPIVNGIPQAIVGTIAGATLTETVFAFPGMGKMLIDSIKAANNSMVVGLVFIFAVLSILALLVG
DILMTILDPRIKLSGKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=854015 QYM01_RS08570 WP_301899622.1 1791086..1792585(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGAAAAAATACATATTTGAACGCATATTGAGGTCGCTTGTTTCAATCCTGCTGGTAACCGCACTAACCTATACCATTGT
CTTTACCTTAGTGCCAAAAAGCTTGATTTTTAAGCAAGACCCTAATTACAATAAGATGGTGACAACACCTGATAAGAAAA
CCAATTATCTAAATACTGTTTTTGAAAATATGGGCTATATTTCCTATTACAGCAGTAAAGAACTGCAGAATAAGGCTTCA
AAGCTTGATCCTGCTGTAACAACTACACCAACTAAGGCCAATGAAAAAATATATCAAAAATATATTGCTTCTATCGGTAA
TGGTTGGAAGCTTGGGCGCTTTACAGAAAGTAAGGGATTTTATGCGGTTAGAGAGATTCCAATCTATGAGCGCGTGTGGA
ATTTCTTTAGCCATTTGGTTGTCATTGATCACCCATGGAAAATCAAGGATCCAAAAAATCCAAATCTAGAGCGTTATGTG
CGACCAGAAATTGACCCTGCTGTTGGTCCGGCCTTAGTTGGCTCTGGTACTAAGCACAAATACTTGATTTACTTCAACAA
GCAATTCCCATTTATCCATCAAAATATCATAACCTTTGATTTGGGAGTGTCCTATCCAACTTATGCCAACATTCCGGTTG
TTCAGGTTATCACTCAAGGACAAGGAAGAACACTTCAAAAGGAGGTTACCTTCCCAACAGGAAAGACAAAATTATCATCA
ATTGATATTTACTCTAGGACTTATAAAACTCCAAGCTCTTTAGATAGCAAGGATATTGCCAATTTTGGTAAGGGTGATGC
TTATACTAATACACAAAATAACTATGCAGAACCATCTATGATTGCAAATTCCTTTAAGATTGGTATTGTCGGTGTCTTGC
TGTCTTATCTTTTTGGTCTGCCAATTGGTATGCTGATGGCTTATTATAAGAATGGCTGGTTTGACCGCTTTTCAACGGCT
GCCACAACCTTTATGTTAGCCCTGCCAAGCATTGCGCTTATCTATATTGTTCGATTTGTCGGCTCTTATTTGGGCTTGCC
AGATACCTTTCCGCTACTAGGAGCAGGAGATGTTAGGTCTTATGTGCTACCTGCTCTTATATTAGGAATTCTTGGTACAC
CAAGTACAGTAGTTTGGTTCCGACGCTATATTGTGGACCTGCAAGGCAGTGATTTTGTTCGCTTTGCACGAGCAAAGGGG
CTTTCAGAATTCGAGATTTCAAAAAATCACCTCTTTAAGCAGGCTATGGTGCCTATTGTTAACGGTATTCCACAAGCCAT
TGTCGGAACAATTGCCGGTGCAACCTTGACAGAGACGGTGTTTGCTTTCCCAGGAATGGGTAAAATGCTGATTGATTCCA
TAAAAGCTGCTAATAACTCTATGGTTGTTGGTCTTGTCTTTATTTTTGCTGTTTTATCAATATTAGCCTTGCTAGTAGGT
GATATTCTTATGACGATTTTAGATCCACGTATTAAATTATCAGGTAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.124

100

0.621
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621
  amiC Streptococcus thermophilus LMD-9

61.924

100

0.619