Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QYM01_RS08560 Genome accession   NZ_CP129527
Coordinates   1789081..1790151 (-) Length   356 a.a.
NCBI ID   WP_012516279.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1784081..1795151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS08545 (QYM01_08545) - 1787341..1787487 (-) 147 Protein_1648 DUF4176 domain-containing protein -
  QYM01_RS08550 (QYM01_08550) - 1787480..1788040 (+) 561 Protein_1649 IS30 family transposase -
  QYM01_RS08555 (QYM01_08555) amiF 1788165..1789088 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  QYM01_RS08560 (QYM01_08560) amiE 1789081..1790151 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  QYM01_RS08565 (QYM01_08565) amiD 1790160..1791086 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  QYM01_RS08570 (QYM01_08570) amiC 1791086..1792585 (-) 1500 WP_301899622.1 ABC transporter permease Regulator
  QYM01_RS08575 (QYM01_08575) amiA3 1792649..1794625 (-) 1977 WP_301899623.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39734.86 Da        Isoelectric Point: 6.1118

>NTDB_id=854013 QYM01_RS08560 WP_012516279.1 1789081..1790151(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MTEKQEIILSAKNIVVEFDVRDRVLTAIRDVSLDLYKGEVLAVVGESGSGKSVLTKTFTGMLEANGRVASGTITYAGQEL
TELKNHKDWEAIRGSKIATIFQDPMTSLDPIQTIGSQITEVIVKHQKKSRSEAKALAIDYMTRVGIPEPEKRFGEYPFQY
SGGMRQRIVIAIALACKPDILICDEPTTALDVTIQAQIIDLLKTLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIIE
YGKVEEIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMAIDFEETVPRFTISDTHWAK
TWLLHPDAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=854013 QYM01_RS08560 WP_012516279.1 1789081..1790151(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGACTGAAAAACAAGAAATTATATTAAGTGCTAAAAATATTGTTGTAGAGTTTGATGTGCGTGATCGTGTATTGACCGC
TATTCGCGATGTTTCTCTTGATTTGTACAAGGGAGAGGTATTGGCTGTTGTTGGTGAGTCAGGCTCTGGCAAGTCTGTTT
TAACTAAGACATTTACAGGAATGCTGGAGGCAAATGGACGTGTTGCTTCAGGGACGATAACCTATGCGGGTCAAGAACTA
ACAGAGCTTAAAAATCATAAGGACTGGGAAGCTATTCGCGGCTCTAAAATTGCTACTATTTTCCAGGATCCAATGACTAG
TCTAGACCCGATTCAAACGATTGGCAGCCAGATTACTGAGGTTATTGTTAAGCATCAGAAAAAATCTAGATCAGAGGCTA
AGGCTTTAGCGATCGATTATATGACAAGGGTCGGTATTCCTGAGCCGGAAAAGCGCTTTGGAGAGTATCCTTTCCAATAT
TCTGGTGGTATGAGACAACGTATCGTTATTGCCATTGCCCTAGCCTGTAAGCCAGATATTCTTATCTGTGATGAGCCGAC
AACAGCTCTTGACGTTACCATTCAGGCTCAGATTATTGACCTGTTAAAGACACTTCAAAAAGAGTATCACTTCACCATTA
TCTTTATCACGCATGACCTAGGAGTGGTTGCAAGTATTGCTGACAAGGTTGCTGTTATGTACGCAGGGGAGATTATTGAA
TACGGAAAGGTTGAGGAAATCTTCTATGATCCTCGTCACCCCTACACATGGAGCTTATTATCTAGCCTACCGCAATTGGC
AGATGAAAAGGGCGTTCTGTTTTCAATTCCAGGGACACCTCCGTCCCTATACAAGCCAATTGTTGGTGATGCCTTTGCGC
CACGCTCTCAGTATGCTATGGCCATTGATTTTGAAGAAACAGTTCCTCGTTTTACGATCAGTGACACGCACTGGGCAAAA
ACCTGGCTCCTACACCCAGATGCACCTAAGGTTCAAAAGCCGGCTGTTATCCAAGATTTGCATCAAAAAATATTGAAAAA
AATGTCACGCCAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.456

93.539

0.528