Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V6U69_RS10045 Genome accession   NZ_CP145867
Coordinates   2153848..2154621 (-) Length   257 a.a.
NCBI ID   WP_155198567.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2148848..2159621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS10030 (V6U69_10020) purC 2151417..2152124 (-) 708 WP_198463560.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  V6U69_RS10035 (V6U69_10025) - 2152387..2152632 (-) 246 WP_060972134.1 phosphopantetheine-binding protein -
  V6U69_RS10040 (V6U69_10030) plsX 2152632..2153636 (-) 1005 WP_013989885.1 phosphate acyltransferase PlsX -
  V6U69_RS10045 (V6U69_10035) recO 2153848..2154621 (-) 774 WP_155198567.1 DNA repair protein RecO Machinery gene
  V6U69_RS10050 (V6U69_10040) - 2154608..2155783 (-) 1176 WP_049545078.1 pyridoxal phosphate-dependent aminotransferase -
  V6U69_RS10055 (V6U69_10045) - 2155875..2156840 (-) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  V6U69_RS10060 (V6U69_10050) - 2157052..2158569 (-) 1518 WP_410533829.1 CHAP domain-containing protein -
  V6U69_RS10065 (V6U69_10055) mreD 2158654..2159178 (-) 525 WP_155198570.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29747.95 Da        Isoelectric Point: 4.8553

>NTDB_id=854013 V6U69_RS10045 WP_155198567.1 2153848..2154621(-) (recO) [Streptococcus salivarius strain KSS10]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGAGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDATIADGVTDAQLFVFLEKTLELMEEGLDYEILTNIFEIQVLDRFGIRLNFHECVFCHRVGL
PFDFSFKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRYFIDALYDNYVGIHLKSKKFI
DNLNSWGHIMDKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=854013 V6U69_RS10045 WP_155198567.1 2153848..2154621(-) (recO) [Streptococcus salivarius strain KSS10]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAATGATAAACTAGTTAAAATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGAGGGGCAGGTAAATTAAGTGCTGTCATTCAACCTTTGACCA
TCGCTGAATTCATGATGACTGTAAATGATGAAGGTCTATCTTTCATAGAAGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAAGTGATATTTTCAAGCTGTCTTATGCGACTTATTTGGCTGCATTGACAGATGCTACTATTGCTGATGGTGTGAC
AGATGCGCAATTATTTGTATTCTTGGAGAAGACGCTTGAATTAATGGAAGAGGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGCATACGCTTGAATTTTCACGAGTGTGTCTTTTGTCATCGTGTAGGCCTT
CCTTTTGATTTCTCGTTTAAGTTCTCGGGGCTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTGGA
CCCTAATGTGCCTTATCTTTTAGATCGTTTTCAGGGGCTTTCCTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGATATTTTATCGATGCCCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGCCATATTATGGATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.241

98.444

0.623