Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V6U70_RS00195 Genome accession   NZ_CP145868
Coordinates   24835..25608 (+) Length   257 a.a.
NCBI ID   WP_014633756.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19835..30608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS00175 (V6U70_00175) mreD 20295..20819 (+) 525 WP_022495821.1 rod shape-determining protein MreD -
  V6U70_RS00180 (V6U70_00180) - 20904..22403 (+) 1500 WP_048790884.1 CHAP domain-containing protein -
  V6U70_RS00185 (V6U70_00185) - 22615..23580 (+) 966 WP_014633754.1 ribose-phosphate diphosphokinase -
  V6U70_RS00190 (V6U70_00190) - 23673..24848 (+) 1176 WP_014633755.1 pyridoxal phosphate-dependent aminotransferase -
  V6U70_RS00195 (V6U70_00195) recO 24835..25608 (+) 774 WP_014633756.1 DNA repair protein RecO Machinery gene
  V6U70_RS00200 (V6U70_00200) plsX 25820..26824 (+) 1005 WP_013989885.1 phosphate acyltransferase PlsX -
  V6U70_RS00205 (V6U70_00205) - 26824..27069 (+) 246 WP_004181960.1 phosphopantetheine-binding protein -
  V6U70_RS00210 (V6U70_00210) purC 27328..28035 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29641.75 Da        Isoelectric Point: 4.8532

>NTDB_id=854014 V6U70_RS00195 WP_014633756.1 24835..25608(+) (recO) [Streptococcus salivarius strain KSS12]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLDPNVPYLLDCFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=854014 V6U70_RS00195 WP_014633756.1 24835..25608(+) (recO) [Streptococcus salivarius strain KSS12]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAGGCAGAGTCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGCTGCTATTGCTGACGGTGTAGC
AGATGCACAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTGGGCCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCATTATGCAGAGGATGAAAGGCGTAGTCACTTAGA
TCCTAATGTACCTTATCTTTTAGATTGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619