Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   QYM01_RS08565 Genome accession   NZ_CP129527
Coordinates   1790160..1791086 (-) Length   308 a.a.
NCBI ID   WP_021321128.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785160..1796086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS08545 (QYM01_08545) - 1787341..1787487 (-) 147 Protein_1648 DUF4176 domain-containing protein -
  QYM01_RS08550 (QYM01_08550) - 1787480..1788040 (+) 561 Protein_1649 IS30 family transposase -
  QYM01_RS08555 (QYM01_08555) amiF 1788165..1789088 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  QYM01_RS08560 (QYM01_08560) amiE 1789081..1790151 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  QYM01_RS08565 (QYM01_08565) amiD 1790160..1791086 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  QYM01_RS08570 (QYM01_08570) amiC 1791086..1792585 (-) 1500 WP_301899622.1 ABC transporter permease Regulator
  QYM01_RS08575 (QYM01_08575) amiA3 1792649..1794625 (-) 1977 WP_301899623.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34532.41 Da        Isoelectric Point: 7.1547

>NTDB_id=854014 QYM01_RS08565 WP_021321128.1 1790160..1791086(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVVMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVIGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=854014 QYM01_RS08565 WP_021321128.1 1790160..1791086(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTGGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCGCGTAAATCAACCGTTGTGATGCTGGTTATTTTAATCGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTCATTGCTACCATCATCAATATGATTATCGGAGTTGTTATCGGTGGTATTTGGGGTG
TTTCCAAGGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTTATTATCATTGTA
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATCTTGCGCTATCGTGATCTAGAATACAATTTAGCCAGTCAAACCCTAGGAACACCGACCCATAAGA
TTGTCATTAAAAACCTTTTGCCTCAATTGGTTTCAGTGATCGTTTCAATGGTTTCCTTGCTATTACCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACGAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.649

100

0.756
  amiD Streptococcus thermophilus LMG 18311

75

100

0.75
  amiD Streptococcus thermophilus LMD-9

75

100

0.75