Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   QYM01_RS06820 Genome accession   NZ_CP129527
Coordinates   1431885..1432607 (-) Length   240 a.a.
NCBI ID   WP_301899366.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1426885..1437607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS06795 (QYM01_06795) pstB 1427050..1427802 (-) 753 WP_043053266.1 phosphate ABC transporter ATP-binding protein PstB -
  QYM01_RS06800 (QYM01_06800) pstA 1427804..1428619 (-) 816 WP_012677664.1 phosphate ABC transporter permease PstA -
  QYM01_RS06805 (QYM01_06805) pstC 1428612..1429475 (-) 864 WP_043053267.1 phosphate ABC transporter permease subunit PstC -
  QYM01_RS06810 (QYM01_06810) - 1429545..1430417 (-) 873 WP_037581704.1 substrate-binding domain-containing protein -
  QYM01_RS06815 (QYM01_06815) pnpS 1430576..1431901 (-) 1326 WP_301899365.1 two-component system histidine kinase PnpS -
  QYM01_RS06820 (QYM01_06820) vicR 1431885..1432607 (-) 723 WP_301899366.1 response regulator transcription factor Regulator
  QYM01_RS06825 (QYM01_06825) - 1432779..1432934 (+) 156 WP_037581691.1 SPJ_0845 family protein -
  QYM01_RS06830 (QYM01_06830) - 1432975..1433877 (+) 903 WP_021320980.1 permease -
  QYM01_RS06835 (QYM01_06835) - 1433877..1434692 (+) 816 WP_115251137.1 TIGR03943 family protein -
  QYM01_RS06840 (QYM01_06840) - 1434877..1436298 (-) 1422 WP_301899368.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28167.71 Da        Isoelectric Point: 6.8840

>NTDB_id=853998 QYM01_RS06820 WP_301899366.1 1431885..1432607(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGKERREPFYMMNQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=853998 QYM01_RS06820 WP_301899366.1 1431885..1432607(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCTAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGCACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTGAGGCGGACTGAAGCAGAGATTTCTGGTGATGGAAAGGAGCGTCGTG
AGCCTTTTTATATGATGAATCAACTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

51.724

96.667

0.5
  micA Streptococcus pneumoniae Cp1015

49.123

95

0.467
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.343

97.083

0.392