Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V6U69_RS07995 Genome accession   NZ_CP145867
Coordinates   1751539..1752498 (-) Length   319 a.a.
NCBI ID   WP_107373296.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1746539..1757498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS07980 (V6U69_07980) - 1747507..1748214 (-) 708 WP_014633986.1 O-methyltransferase -
  V6U69_RS07985 (V6U69_07985) - 1748286..1749506 (-) 1221 WP_410533629.1 OFA family MFS transporter -
  V6U69_RS07990 (V6U69_07990) pepF 1749723..1751528 (-) 1806 WP_060973367.1 oligoendopeptidase F Regulator
  V6U69_RS07995 (V6U69_07995) coiA 1751539..1752498 (-) 960 WP_107373296.1 competence protein CoiA Machinery gene
  V6U69_RS08000 (V6U69_08000) - 1753801..1755738 (-) 1938 WP_107372608.1 GbpC/Spa domain-containing protein -
  V6U69_RS08005 (V6U69_08005) - 1756149..1756889 (+) 741 WP_107372606.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37989.77 Da        Isoelectric Point: 9.4923

>NTDB_id=853988 V6U69_RS07995 WP_107373296.1 1751539..1752498(-) (coiA) [Streptococcus salivarius strain KSS10]
MLIAKNPEGNLVSALETSLNREESYCCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVRIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTRAYHQTGYEVRWLLGEDLWLGRRLTDLQRDFLYFTAKI
GFHLWELDWKKEEIRLKYLIYEDIFGRVYYLTKTWPLTENLMAVLRYPYQAEKVKTYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKLFKQYYRKSHFSYRQTLYPPTFYAKIEKNRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=853988 V6U69_RS07995 WP_107373296.1 1751539..1752498(-) (coiA) [Streptococcus salivarius strain KSS10]
GTGTTAATTGCAAAAAATCCGGAGGGAAACCTCGTTTCAGCTCTAGAAACTAGTTTGAATCGTGAGGAATCCTATTGCTG
TCCGGGCTGTCAGGGAGTTGTCCTATTGAGACATGGTCAAGTCATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCCTTATATAAATCTTTGGTTAATCATGGT
GAAAAAGTACGTATTGAAAAGGTTTTGTCCGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTGGA
AGTTCAGTGTTCTCGTTTATCTCAGCAACGTTTGAGAGAGAGGACACGCGCCTATCACCAAACAGGTTATGAAGTGCGTT
GGCTTTTGGGGGAAGACCTATGGTTGGGACGGCGTTTAACAGACTTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCATCTATGGGAGCTTGATTGGAAGAAAGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTCTATTACTTAACTAAGACCTGGCCTTTAACCGAAAATCTGATGGCAGTTCTACGTTATCCTTATCAAGCAGAAAAGG
TTAAGACCTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGACAGGAGGAAGCCTATCTTAAGGGAATGAATTTGTTATGTCTGTCTGATCAGGATTTTTTCCCACAAGTGAG
ATTTCCTGAATCTAAGCAAGGATTTGTCCAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTAAGCAATATTATC
GAAAAAGTCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGAAAAGAATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.338

97.492

0.442
  coiA Streptococcus pneumoniae D39

45.338

97.492

0.442
  coiA Streptococcus pneumoniae R6

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.016

97.492

0.439
  coiA Lactococcus lactis subsp. cremoris KW2

36.97

100

0.382