Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QYM42_RS09405 Genome accession   NZ_CP129526
Coordinates   1915418..1916407 (-) Length   329 a.a.
NCBI ID   WP_251899784.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1910418..1921407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS09390 (QYM42_09390) - 1911783..1912709 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  QYM42_RS09395 (QYM42_09395) - 1912858..1913547 (-) 690 WP_205288533.1 O-methyltransferase -
  QYM42_RS09400 (QYM42_09400) pepF 1913550..1915355 (-) 1806 WP_251899783.1 oligoendopeptidase F Regulator
  QYM42_RS09405 (QYM42_09405) coiA 1915418..1916407 (-) 990 WP_251899784.1 competence protein CoiA Machinery gene
  QYM42_RS09410 (QYM42_09410) - 1916481..1917566 (-) 1086 WP_251899785.1 YdcF family protein -
  QYM42_RS09415 (QYM42_09415) - 1917728..1918576 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  QYM42_RS09420 (QYM42_09420) - 1918768..1920189 (-) 1422 WP_012898314.1 NCS2 family permease -
  QYM42_RS09425 (QYM42_09425) - 1920496..1921332 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39448.02 Da        Isoelectric Point: 8.7292

>NTDB_id=853939 QYM42_RS09405 WP_251899784.1 1915418..1916407(-) (coiA) [Lactococcus lactis strain ZZ-2]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYLPEFKQRPDLLVNDKIAVEIQCSHLSTKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLKEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=853939 QYM42_RS09405 WP_251899784.1 1915418..1916407(-) (coiA) [Lactococcus lactis strain ZZ-2]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATCTTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTGTTGA
AATTCAATGTTCTCATCTTTCTACGAAACGTTTAAAAGAAAGGACAGAAAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTAAAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGCGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.54

99.088

0.739
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426
  coiA Streptococcus mitis NCTC 12261

43.26

96.96

0.419