Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   V6U68_RS08390 Genome accession   NZ_CP145866
Coordinates   1822221..1822970 (+) Length   249 a.a.
NCBI ID   WP_014634988.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1817221..1827970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS08370 (V6U68_08350) - 1819419..1819715 (-) 297 WP_073687331.1 bacteriocin immunity protein -
  V6U68_RS08375 (V6U68_08355) - 1820083..1820475 (-) 393 WP_003094909.1 hypothetical protein -
  V6U68_RS08380 (V6U68_08360) - 1820511..1820645 (-) 135 Protein_1611 Blp family class II bacteriocin -
  V6U68_RS08385 (V6U68_08365) comE/blpR 1820899..1821639 (+) 741 WP_410531625.1 response regulator transcription factor Regulator
  V6U68_RS08390 (V6U68_08370) comD/comD3 1822221..1822970 (+) 750 WP_014634988.1 sensor histidine kinase Regulator
  V6U68_RS08395 (V6U68_08375) - 1823057..1823458 (-) 402 WP_038676702.1 hypothetical protein -
  V6U68_RS08400 (V6U68_08380) - 1824431..1824661 (-) 231 WP_014632652.1 Blp family class II bacteriocin -
  V6U68_RS08405 (V6U68_08385) - 1824822..1826570 (-) 1749 WP_410531627.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28630.89 Da        Isoelectric Point: 5.6824

>NTDB_id=853879 V6U68_RS08390 WP_014634988.1 1822221..1822970(+) (comD/comD3) [Streptococcus salivarius strain KSS9]
MVIYLVLFFIMLIFLDRNIRATIQSQLDFQKDIQLSHLKNYNKQIENLYQSVRSFRHDYANILTTLKLGIEQNDMAIVKE
VYDSVLKDSDKHLKSKTFDLTRLINIGDNTIKSLLASKFLEAEENNIDVSLDIPETIKLEGMEMVDFITVISIFLDNAME
ASIQSDIPKMHIGYFNHGNKQLFIVQNSTREEFISITSLFERGVSSKEGNRGIGLANVRNILDNYQNISLKTESMTFAFT
QELNISKKA

Nucleotide


Download         Length: 750 bp        

>NTDB_id=853879 V6U68_RS08390 WP_014634988.1 1822221..1822970(+) (comD/comD3) [Streptococcus salivarius strain KSS9]
GTGGTTATTTATCTAGTCTTGTTCTTTATCATGCTTATCTTCTTAGATAGAAATATCCGAGCAACAATACAAAGTCAGTT
GGACTTTCAAAAAGATATTCAACTATCGCATCTTAAGAATTATAACAAACAGATTGAAAACCTCTATCAGTCGGTTCGAA
GTTTTCGTCATGATTATGCCAATATTTTAACAACACTCAAACTTGGTATCGAACAAAATGATATGGCTATTGTGAAAGAA
GTCTACGACTCAGTTCTAAAAGATTCCGATAAGCATTTAAAATCGAAAACATTTGATTTAACTCGCTTAATAAACATAGG
AGATAACACTATTAAAAGCCTACTTGCATCTAAGTTCCTAGAGGCAGAAGAAAATAACATTGATGTCTCTCTAGATATTC
CTGAAACTATCAAACTTGAGGGTATGGAGATGGTCGATTTTATTACTGTCATATCTATCTTTCTAGACAATGCGATGGAA
GCATCGATTCAGTCTGACATACCAAAAATGCATATTGGCTACTTCAACCATGGTAATAAACAGCTCTTTATTGTCCAAAA
CTCGACCCGGGAAGAATTCATTTCGATTACCTCACTTTTTGAGAGAGGTGTCTCAAGTAAAGAAGGTAATCGAGGTATAG
GTTTGGCCAACGTTAGGAATATCCTAGACAACTATCAAAATATTTCTTTAAAAACTGAAAGTATGACTTTTGCATTTACA
CAGGAACTTAATATATCGAAAAAAGCTTGA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(142-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

41.152

97.59

0.402
  comD/blpH Streptococcus mutans UA159

39.184

98.394

0.386
  comD/comD2 Streptococcus equinus JB1

39.506

97.59

0.386