Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V6U68_RS02155 Genome accession   NZ_CP145866
Coordinates   413957..414916 (+) Length   319 a.a.
NCBI ID   WP_410531817.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 408957..419916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS02145 (V6U68_02140) - 409566..410306 (-) 741 WP_064520601.1 CPBP family intramembrane glutamic endopeptidase -
  V6U68_RS02150 (V6U68_02145) - 410717..412654 (+) 1938 WP_064520602.1 GbpC/Spa domain-containing protein -
  V6U68_RS02155 (V6U68_02150) coiA 413957..414916 (+) 960 WP_410531817.1 competence protein CoiA Machinery gene
  V6U68_RS02160 (V6U68_02155) pepF 414927..416732 (+) 1806 WP_037599540.1 oligoendopeptidase F Regulator
  V6U68_RS02165 (V6U68_02160) - 416949..418169 (+) 1221 WP_410531818.1 OFA family MFS transporter -
  V6U68_RS02170 (V6U68_02165) - 418241..418948 (+) 708 WP_410531819.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37857.77 Da        Isoelectric Point: 9.5740

>NTDB_id=853816 V6U68_RS02155 WP_410531817.1 413957..414916(+) (coiA) [Streptococcus salivarius strain KSS9]
MLIAKNQEGKLVSALETSLQRKESYSCPGCQGVVLLKHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHKAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEQVETYQVTQRKKVSHVIQRELIGKNPRW
MRRQEKAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKLFMQYYRKRHFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=853816 V6U68_RS02155 WP_410531817.1 413957..414916(+) (coiA) [Streptococcus salivarius strain KSS9]
ATGTTAATTGCAAAAAATCAGGAGGGGAAGCTCGTTTCAGCTCTAGAAACCAGTTTGCAACGTAAGGAATCCTATAGCTG
TCCTGGTTGCCAGGGAGTTGTCCTTCTGAAACATGGCCAGGTAATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCTTTGTATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAGGTTTTGTCTGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGGTTATCTCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACAAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACCTACAGCGGGACTTTCTCTATTTTACGGCTAAGATT
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCTTGGCCGTTAACCGAAAATCTCATGACAGTTTTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTAACTCAGCGAAAGAAGGTCTCACATGTGATTCAACGAGAATTAATTGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAAAAGCCTATCTTAAGGGAATGAATTTGTTATGCCTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCAGAATCTAAGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTATGCAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

44.695

97.492

0.436
  coiA Streptococcus pneumoniae Rx1

44.695

97.492

0.436
  coiA Streptococcus pneumoniae D39

44.695

97.492

0.436
  coiA Streptococcus pneumoniae R6

44.695

97.492

0.436
  coiA Streptococcus mitis NCTC 12261

44.695

97.492

0.436
  coiA Lactococcus lactis subsp. cremoris KW2

37.273

100

0.386