Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   V6U68_RS01745 Genome accession   NZ_CP145866
Coordinates   331838..332500 (+) Length   220 a.a.
NCBI ID   WP_156246370.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326838..337500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS01720 (V6U68_01715) - 327176..327886 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  V6U68_RS01725 (V6U68_01720) - 328021..328680 (+) 660 WP_037600377.1 CBS and ACT domain-containing protein -
  V6U68_RS01730 (V6U68_01725) cysK 328829..329755 (-) 927 WP_061652497.1 cysteine synthase A -
  V6U68_RS01735 (V6U68_01730) - 329857..330483 (-) 627 WP_061652496.1 YigZ family protein -
  V6U68_RS01740 (V6U68_01735) comFA/cflA 330538..331857 (+) 1320 WP_061652495.1 DEAD/DEAH box helicase Machinery gene
  V6U68_RS01745 (V6U68_01740) comFC/cflB 331838..332500 (+) 663 WP_156246370.1 ComF family protein Machinery gene
  V6U68_RS01750 (V6U68_01745) hpf 332579..333127 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26121.42 Da        Isoelectric Point: 8.5995

>NTDB_id=853811 V6U68_RS01745 WP_156246370.1 331838..332500(+) (comFC/cflB) [Streptococcus salivarius strain KSS9]
MKCLLCNDWIESLPKLRDLIMFNQRKEYSCRSCKHQFKNLSKERCQNCNKELYGDACIDCKLWMKKGYIPKHLAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQDIKNNLKPFLKKGYTIVPVPLSEERLAERGFNQVEGLIEGIPYRDIFEKRDIEKQSS
KTREERLSQDNAFCLKEGINLPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=853811 V6U68_RS01745 WP_156246370.1 331838..332500(+) (comFC/cflB) [Streptococcus salivarius strain KSS9]
ATGAAGTGTCTGCTATGTAATGATTGGATTGAATCACTACCAAAATTAAGAGACCTCATTATGTTTAACCAAAGAAAAGA
GTACTCTTGCCGATCTTGTAAACATCAGTTTAAAAACCTCTCAAAAGAAAGATGTCAAAATTGTAACAAAGAGTTATATG
GAGATGCTTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCTATTTATCGATATGAGGAA
AATATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAATATTTCAACAAGATATTAAAAA
CAACTTAAAACCATTTTTGAAGAAAGGTTATACCATAGTGCCAGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TCAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCGGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCCTCA
AAAACACGCGAGGAGCGTCTAAGTCAAGATAATGCTTTCTGTCTCAAGGAGGGTATAAATCTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACGGGTTCCACTTTATATCAGATGGTTCAACTGTTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.445
  comFC/cflB Streptococcus mitis SK321

43.694

100

0.441