Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   V6U67_RS03835 Genome accession   NZ_CP145865
Coordinates   763400..764056 (-) Length   218 a.a.
NCBI ID   WP_073687598.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758400..769056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS03820 (V6U67_03825) holA 760138..761172 (+) 1035 WP_002884017.1 DNA polymerase III subunit delta -
  V6U67_RS03825 (V6U67_03830) sodA 761268..761873 (+) 606 WP_002884006.1 superoxide dismutase SodA -
  V6U67_RS03830 (V6U67_03835) - 761971..763368 (+) 1398 WP_272126317.1 serine hydrolase -
  V6U67_RS03835 (V6U67_03840) cclA/cilC 763400..764056 (-) 657 WP_073687598.1 prepilin peptidase Machinery gene
  V6U67_RS03840 (V6U67_03845) - 764166..764687 (+) 522 WP_014634248.1 Dps family protein -
  V6U67_RS03845 (V6U67_03850) - 764775..765212 (+) 438 WP_002884117.1 Fur family transcriptional regulator -
  V6U67_RS03850 (V6U67_03855) - 765315..765521 (+) 207 WP_014634249.1 YqgQ family protein -
  V6U67_RS03855 (V6U67_03860) - 765514..766482 (+) 969 WP_002884020.1 ROK family glucokinase -
  V6U67_RS03860 (V6U67_03865) typA 766627..768477 (+) 1851 WP_002884130.1 translational GTPase TypA -
  V6U67_RS03865 (V6U67_03870) - 768497..768766 (+) 270 WP_002884134.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25089.45 Da        Isoelectric Point: 7.6981

>NTDB_id=853718 V6U67_RS03835 WP_073687598.1 763400..764056(-) (cclA/cilC) [Streptococcus salivarius strain KSS8]
MLSIIYFFLGASLGSFIGLICDRFPEKSIIFPSSHCSHCKHQLCFFEIIPILSQLFLRSRCRSCQTPIPLRYLFMELFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKHKSYPLLIWIVGTVPLLFMGNYYLSFALGIILAILSYMKHLNIGEGDFL
YLASASLIFPFSKILLIIEIACLLGLAYFLLQRNLKECIAFVPFLFLGILLLTFCSII

Nucleotide


Download         Length: 657 bp        

>NTDB_id=853718 V6U67_RS03835 WP_073687598.1 763400..764056(-) (cclA/cilC) [Streptococcus salivarius strain KSS8]
ATGTTAAGTATTATTTATTTTTTTCTAGGAGCCTCTTTAGGTTCATTTATCGGACTAATTTGTGATCGTTTTCCTGAAAA
GTCGATTATTTTTCCTAGTAGTCACTGTAGTCACTGCAAGCATCAGTTGTGTTTTTTCGAGATAATCCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGTTCATGTCAGACTCCTATCCCTCTTCGTTACCTCTTTATGGAACTATTTTGTGGA
GTAATATGCCTTCTATATTTTTATGACTTTTTAAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTCTATCAAT
TTTTGATTTGAAACATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACAGTCCCACTCTTATTCATGGGCAACTACT
ACCTCTCATTTGCCTTGGGGATAATCCTCGCCATCCTTTCTTATATGAAACATCTAAATATTGGGGAAGGAGATTTTCTC
TACTTAGCAAGTGCCTCACTAATTTTCCCATTTTCAAAAATACTACTTATTATCGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACAAAGAAATCTCAAGGAATGCATCGCATTTGTCCCATTTCTTTTTCTAGGGATATTACTTCTTACTT
TTTGTTCAATTATATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

40.367

100

0.404
  cclA/cilC Streptococcus pneumoniae TIGR4

40.367

100

0.404
  cclA/cilC Streptococcus mitis NCTC 12261

40.187

98.165

0.394
  cclA/cilC Streptococcus pneumoniae Rx1

40.187

98.165

0.394
  cclA/cilC Streptococcus pneumoniae D39

40.187

98.165

0.394
  cclA/cilC Streptococcus pneumoniae R6

40.187

98.165

0.394