Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   V6U67_RS01800 Genome accession   NZ_CP145865
Coordinates   346156..346818 (+) Length   220 a.a.
NCBI ID   WP_022496199.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341156..351818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS01775 (V6U67_01780) - 341493..342203 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  V6U67_RS01780 (V6U67_01785) - 342338..342997 (+) 660 WP_201061367.1 CBS and ACT domain-containing protein -
  V6U67_RS01785 (V6U67_01790) cysK 343147..344073 (-) 927 WP_002883742.1 cysteine synthase A -
  V6U67_RS01790 (V6U67_01795) - 344175..344801 (-) 627 WP_022496201.1 YigZ family protein -
  V6U67_RS01795 (V6U67_01800) comFA/cflA 344856..346175 (+) 1320 WP_022496200.1 DEAD/DEAH box helicase Machinery gene
  V6U67_RS01800 (V6U67_01805) comFC/cflB 346156..346818 (+) 663 WP_022496199.1 ComF family protein Machinery gene
  V6U67_RS01805 (V6U67_01810) hpf 346897..347445 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26132.38 Da        Isoelectric Point: 8.6032

>NTDB_id=853698 V6U67_RS01800 WP_022496199.1 346156..346818(+) (comFC/cflB) [Streptococcus salivarius strain KSS8]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNNLKPFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTREERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=853698 V6U67_RS01800 WP_022496199.1 346156..346818(+) (comFC/cflB) [Streptococcus salivarius strain KSS8]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAAAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGACTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAATTTAAAACCATTTTTTAAAAAAGGTTATACCATAGTGCCGGTCCCATTGTCGGAAGAACGCTTGGTAGAAAGAGGGT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGTGAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCCACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45