Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QYL88_RS12350 Genome accession   NZ_CP129460
Coordinates   2623422..2623928 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain N9-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2618422..2628928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYL88_RS12320 - 2619341..2619472 (-) 132 WP_015728521.1 hypothetical protein -
  QYL88_RS12325 - 2619641..2621632 (+) 1992 WP_014614918.1 catalase -
  QYL88_RS12330 - 2621846..2622220 (-) 375 WP_157980673.1 Abi family protein -
  QYL88_RS12335 - 2622217..2622363 (-) 147 Protein_2402 Abi family protein -
  QYL88_RS12340 - 2622576..2622935 (-) 360 WP_228064226.1 hypothetical protein -
  QYL88_RS12345 rpsR 2623126..2623368 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  QYL88_RS12350 ssbA 2623422..2623928 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  QYL88_RS12355 rpsF 2623951..2624247 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  QYL88_RS12360 sbi 2624584..2626074 (+) 1491 WP_140241469.1 Ig-binding surface protein Sbi/SpsK -
  QYL88_RS12365 - 2626128..2626937 (-) 810 WP_014614923.1 ABC transporter permease subunit -
  QYL88_RS12370 - 2626930..2627865 (-) 936 WP_131112588.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=853522 QYL88_RS12350 WP_014614920.1 2623422..2623928(-) (ssbA) [Staphylococcus pseudintermedius strain N9-1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=853522 QYL88_RS12350 WP_014614920.1 2623422..2623928(-) (ssbA) [Staphylococcus pseudintermedius strain N9-1]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381