Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V6U64_RS09820 Genome accession   NZ_CP145862
Coordinates   2114075..2114665 (-) Length   196 a.a.
NCBI ID   WP_004181981.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2109075..2119665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS09800 (V6U64_09805) spx 2110407..2110805 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  V6U64_RS09805 (V6U64_09810) recA 2110972..2112111 (-) 1140 WP_410536628.1 recombinase RecA Machinery gene
  V6U64_RS09810 (V6U64_09815) cinA 2112147..2113415 (-) 1269 WP_080611071.1 competence/damage-inducible protein A Machinery gene
  V6U64_RS09815 (V6U64_09820) - 2113512..2114066 (-) 555 WP_080611069.1 DNA-3-methyladenine glycosylase I -
  V6U64_RS09820 (V6U64_09825) ruvA 2114075..2114665 (-) 591 WP_004181981.1 Holliday junction branch migration protein RuvA Machinery gene
  V6U64_RS09825 (V6U64_09830) - 2114946..2116195 (+) 1250 Protein_1895 ISL3 family transposase -
  V6U64_RS09830 (V6U64_09835) - 2116242..2116463 (-) 222 WP_080611067.1 hypothetical protein -
  V6U64_RS09835 (V6U64_09840) hexB 2116594..2118537 (-) 1944 WP_022495805.1 DNA mismatch repair endonuclease MutL Machinery gene
  V6U64_RS09840 (V6U64_09845) - 2118589..2118894 (-) 306 WP_042762228.1 hypothetical protein -
  V6U64_RS09845 (V6U64_09850) - 2119073..2119510 (+) 438 WP_059749062.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21698.10 Da        Isoelectric Point: 5.6710

>NTDB_id=853441 V6U64_RS09820 WP_004181981.1 2114075..2114665(-) (ruvA) [Streptococcus salivarius strain KSS4]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALL
ALGYKAAELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=853441 V6U64_RS09820 WP_004181981.1 2114075..2114665(-) (ruvA) [Streptococcus salivarius strain KSS4]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAGGTTATTAGAG
ATGATGCCCACCTTCTGTTTGGTTTTCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCTCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCCGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAGCAAATGGTTCTGGACTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACAACACCAAGTCAACCTGAAGGGAATCATCAGTTGGACGAGGCTATGGAAGCCTTGCTT
GCTCTTGGTTATAAAGCTGCAGAACTTAAGAAAATCAAAGCCTTCTTCGAAGGTACTAATGAAACGGCAGAGCAATACAT
TAAATCAGCTCTTAAGATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423