Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V6U64_RS07955 Genome accession   NZ_CP145862
Coordinates   1743536..1744495 (-) Length   319 a.a.
NCBI ID   WP_048790170.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1738536..1749495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS07940 (V6U64_07940) - 1739507..1740214 (-) 708 WP_014633986.1 O-methyltransferase -
  V6U64_RS07945 (V6U64_07945) - 1740286..1741506 (-) 1221 WP_064523785.1 OFA family MFS transporter -
  V6U64_RS07950 (V6U64_07950) pepF 1741720..1743525 (-) 1806 WP_037599540.1 oligoendopeptidase F Regulator
  V6U64_RS07955 (V6U64_07955) coiA 1743536..1744495 (-) 960 WP_048790170.1 competence protein CoiA Machinery gene
  V6U64_RS07960 (V6U64_07960) - 1745801..1747738 (-) 1938 WP_038675412.1 GbpC/Spa domain-containing protein -
  V6U64_RS07965 (V6U64_07965) - 1748150..1748890 (+) 741 WP_037612002.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37913.76 Da        Isoelectric Point: 9.4968

>NTDB_id=853419 V6U64_RS07955 WP_048790170.1 1743536..1744495(-) (coiA) [Streptococcus salivarius strain KSS4]
MLIARNQEGKLVSALETSLQRKESYSCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEQVETYQVTQRKKVSHVIQRELIGKNPRW
MRRQEKAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKLFMQYYRKRHFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=853419 V6U64_RS07955 WP_048790170.1 1743536..1744495(-) (coiA) [Streptococcus salivarius strain KSS4]
ATGTTAATTGCAAGAAATCAGGAGGGGAAGCTCGTTTCAGCTCTAGAAACCAGTTTGCAACGTAAGGAATCCTATAGCTG
TCCTGGTTGCCAGGGAGTTGTTCTTCTGAGACATGGCCAGGTAATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCTTTGTATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAAGTTTTGTCTGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGGTTATCCCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTAGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACCTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCTTGGCCGTTAACCGAAAATCTCATGACAGTTTTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTAACTCAGCGAAAGAAGGTCTCACATGTGATTCAACGAGAATTAATTGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAAAAGCCTATCTTAAGGGAATGAATTTGTTATGCCTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCAGAATCTAAGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTATGCAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.338

97.492

0.442
  coiA Streptococcus pneumoniae D39

45.338

97.492

0.442
  coiA Streptococcus pneumoniae R6

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442
  coiA Lactococcus lactis subsp. cremoris KW2

36.97

100

0.382