Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   V6U63_RS03750 Genome accession   NZ_CP145861
Coordinates   741399..742055 (-) Length   218 a.a.
NCBI ID   WP_022496824.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 736399..747055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS03735 (V6U63_03740) holA 738149..739183 (+) 1035 WP_038675727.1 DNA polymerase III subunit delta -
  V6U63_RS03740 (V6U63_03745) sodA 739279..739884 (+) 606 WP_004182735.1 superoxide dismutase SodA -
  V6U63_RS03745 (V6U63_03750) - 739982..741367 (+) 1386 WP_183139572.1 serine hydrolase -
  V6U63_RS03750 (V6U63_03755) cclA/cilC 741399..742055 (-) 657 WP_022496824.1 prepilin peptidase Machinery gene
  V6U63_RS03755 (V6U63_03760) - 742165..742686 (+) 522 WP_014634248.1 Dps family protein -
  V6U63_RS03760 (V6U63_03765) - 742774..743211 (+) 438 WP_002884117.1 Fur family transcriptional regulator -
  V6U63_RS03765 (V6U63_03770) - 743315..743521 (+) 207 WP_014634249.1 YqgQ family protein -
  V6U63_RS03770 (V6U63_03775) - 743514..744482 (+) 969 WP_022496826.1 ROK family glucokinase -
  V6U63_RS03775 (V6U63_03780) typA 744627..746477 (+) 1851 WP_195914507.1 translational GTPase TypA -
  V6U63_RS03780 (V6U63_03785) - 746497..746766 (+) 270 WP_002884134.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25329.68 Da        Isoelectric Point: 8.1099

>NTDB_id=853265 V6U63_RS03750 WP_022496824.1 741399..742055(-) (cclA/cilC) [Streptococcus salivarius strain KSS3]
MLSIIYFFLGASFGSFIGLICDRFPERSIIFPRSHCSHCKHQLRFFEMIPILSQLFLRFRCRSCQTPIPFRYLFMELFCG
GICLLYFYDFLSLEVTYFLYFSLCLSIFDLKHKSYPLLIWIVGTVPLLFMGNYYLSFALGIILAILSYMKHLNIGEGDFL
YLASASLIFPFSKILLIIEIACLLGLAYFLLQRNLKECIAFVPFLFLGIVLLTFCSII

Nucleotide


Download         Length: 657 bp        

>NTDB_id=853265 V6U63_RS03750 WP_022496824.1 741399..742055(-) (cclA/cilC) [Streptococcus salivarius strain KSS3]
ATGTTAAGTATTATTTATTTTTTTCTAGGAGCCTCTTTTGGTTCATTCATCGGACTAATTTGTGATCGTTTTCCTGAGAG
GTCGATTATTTTCCCTAGAAGTCACTGTAGCCATTGCAAGCATCAGCTGCGTTTTTTCGAGATGATCCCTATCCTCTCAC
AACTTTTCTTAAGATTTCGATGCCGTTCATGTCAGACTCCTATCCCTTTTCGTTACCTCTTTATGGAACTATTTTGTGGG
GGAATATGCCTGCTATATTTCTATGACTTTTTGAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTCTATCAAT
TTTTGATTTGAAACATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACAGTCCCACTCTTATTCATGGGCAACTACT
ACCTCTCATTTGCCTTGGGGATAATCCTCGCCATCCTTTCTTATATGAAACATCTAAATATTGGGGAAGGAGATTTTCTC
TACTTAGCAAGTGCCTCACTAATTTTCCCATTTTCAAAAATACTACTTATTATCGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACAAAGAAATCTCAAGGAATGCATCGCATTTGTCCCATTTCTTTTTCTAGGGATAGTACTTCTTACTT
TTTGTTCAATTATATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

40.826

100

0.408
  cclA/cilC Streptococcus pneumoniae TIGR4

40.826

100

0.408
  cclA/cilC Streptococcus mitis NCTC 12261

40.654

98.165

0.399
  cclA/cilC Streptococcus pneumoniae Rx1

40.654

98.165

0.399
  cclA/cilC Streptococcus pneumoniae D39

40.654

98.165

0.399
  cclA/cilC Streptococcus pneumoniae R6

40.654

98.165

0.399