Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V6U62_RS09735 Genome accession   NZ_CP145860
Coordinates   2092492..2093082 (-) Length   196 a.a.
NCBI ID   WP_002886323.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2087492..2098082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS09715 (V6U62_09700) spx 2088823..2089221 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  V6U62_RS09720 (V6U62_09705) recA 2089389..2090528 (-) 1140 WP_002886327.1 recombinase RecA Machinery gene
  V6U62_RS09725 (V6U62_09710) cinA 2090564..2091832 (-) 1269 WP_014633777.1 competence/damage-inducible protein A Machinery gene
  V6U62_RS09730 (V6U62_09715) - 2091929..2092483 (-) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  V6U62_RS09735 (V6U62_09720) ruvA 2092492..2093082 (-) 591 WP_002886323.1 Holliday junction branch migration protein RuvA Machinery gene
  V6U62_RS09740 (V6U62_09725) - 2093240..2093461 (-) 222 WP_022495804.1 hypothetical protein -
  V6U62_RS09745 (V6U62_09730) hexB 2093592..2095535 (-) 1944 WP_022495805.1 DNA mismatch repair endonuclease MutL Machinery gene
  V6U62_RS09750 (V6U62_09735) - 2095585..2095890 (-) 306 WP_002886319.1 hypothetical protein -
  V6U62_RS09755 (V6U62_09740) - 2096069..2096506 (+) 438 WP_073686198.1 LytTR family DNA-binding domain-containing protein -
  V6U62_RS09760 (V6U62_09745) - 2096503..2096958 (+) 456 WP_045768436.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21728.12 Da        Isoelectric Point: 5.6710

>NTDB_id=853220 V6U62_RS09735 WP_002886323.1 2092492..2093082(-) (ruvA) [Streptococcus salivarius strain KSS2]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALI
ALGYKATELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=853220 V6U62_RS09735 WP_002886323.1 2092492..2093082(-) (ruvA) [Streptococcus salivarius strain KSS2]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAGGTTATTAGAG
ACGATGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCCCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCTGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAACAAATGGTTCTGGATTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGGAATCATCAATTGGATGAGGCTATGGAAGCCTTGATT
GCTCTTGGTTATAAAGCCACAGAACTTAAGAAAATCAAGGCCTTCTTCGAAGGAACTAATGAAACGGCAGAGCAATACAT
TAAATCGGCTCTTAAAATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423