Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   V6U62_RS08285 Genome accession   NZ_CP145860
Coordinates   1806824..1807486 (-) Length   220 a.a.
NCBI ID   WP_195187835.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1801824..1812486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS08280 (V6U62_08260) hpf 1806197..1806745 (-) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  V6U62_RS08285 (V6U62_08265) comFC/cflB 1806824..1807486 (-) 663 WP_195187835.1 ComF family protein Machinery gene
  V6U62_RS08290 (V6U62_08270) comFA/cflA 1807467..1808786 (-) 1320 WP_349955341.1 DEAD/DEAH box helicase Machinery gene
  V6U62_RS08295 (V6U62_08275) - 1808841..1809467 (+) 627 WP_084870205.1 YigZ family protein -
  V6U62_RS08300 (V6U62_08280) cysK 1809569..1810495 (+) 927 WP_002883742.1 cysteine synthase A -
  V6U62_RS08305 (V6U62_08285) - 1810679..1811338 (-) 660 WP_195914704.1 CBS and ACT domain-containing protein -
  V6U62_RS08310 (V6U62_08290) - 1811473..1812183 (-) 711 WP_002883761.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26219.51 Da        Isoelectric Point: 8.8883

>NTDB_id=853203 V6U62_RS08285 WP_195187835.1 1806824..1807486(-) (comFC/cflB) [Streptococcus salivarius strain KSS2]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCRNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNNLKRFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTREERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=853203 V6U62_RS08285 WP_195187835.1 1806824..1807486(-) (comFC/cflB) [Streptococcus salivarius strain KSS2]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCGAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAATTTAAAACGATTTTTTAAAAAAGGTTATACCATAGTGCCGGTCCCATTGTCGGAAGAACGCTTGGTAGAAAGAGGGT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGTGAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCCACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45