Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V6U62_RS07880 Genome accession   NZ_CP145860
Coordinates   1726493..1727452 (-) Length   319 a.a.
NCBI ID   WP_272125980.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721493..1732452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS07865 (V6U62_07845) - 1722466..1723173 (-) 708 WP_151404508.1 O-methyltransferase -
  V6U62_RS07870 (V6U62_07850) - 1723245..1724465 (-) 1221 WP_254735012.1 OFA family MFS transporter -
  V6U62_RS07875 (V6U62_07855) pepF 1724677..1726482 (-) 1806 WP_272125982.1 oligoendopeptidase F Regulator
  V6U62_RS07880 (V6U62_07860) coiA 1726493..1727452 (-) 960 WP_272125980.1 competence protein CoiA Machinery gene
  V6U62_RS07885 (V6U62_07865) - 1728753..1730690 (-) 1938 WP_272125978.1 GbpC/Spa domain-containing protein -
  V6U62_RS07890 (V6U62_07870) - 1731102..1731842 (+) 741 WP_272125975.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37843.56 Da        Isoelectric Point: 9.5079

>NTDB_id=853198 V6U62_RS07880 WP_272125980.1 1726493..1727452(-) (coiA) [Streptococcus salivarius strain KSS2]
MLIARNQKGNLVSALETSLNRKDSYCCPGCQGVVLLRQGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
ERVWIEKVLPKMGQIADLFVGDSLALEVQCSRLPQERLRERTHAYHQAGYEVRWLLGEDLWLGQRLTGLQRDFLYFTSKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEQVETYQVTQRKKVSQVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKQGFVQIGQSLEGFEKLFKQYYRKSHFSYRQTLYPPTFYAKIEKNRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=853198 V6U62_RS07880 WP_272125980.1 1726493..1727452(-) (coiA) [Streptococcus salivarius strain KSS2]
ATGTTAATTGCAAGAAATCAGAAAGGAAATCTCGTTTCAGCTCTAGAAACTAGTTTGAATCGTAAGGATTCTTATTGCTG
TCCGGGCTGCCAAGGAGTTGTCCTTCTGAGACAGGGTCAGGTGATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCTGCTCAACATCTATCGCTTAAGGCGGCTTTATATAAGTCCTTGGTTAATCATGGT
GAAAGAGTATGGATTGAAAAGGTTTTGCCTAAGATGGGGCAAATTGCCGATTTATTTGTTGGCGATTCCTTGGCTCTGGA
AGTTCAGTGTTCTCGTTTGCCTCAGGAACGTTTGAGAGAGAGGACACATGCTTATCATCAAGCGGGTTACGAGGTGCGTT
GGCTTTTAGGCGAAGACCTTTGGTTGGGTCAGCGTTTAACTGGTTTACAGCGGGACTTTCTCTATTTTACGTCTAAGATT
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTTATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCTTGGCCGTTAACCGAAAATCTCATGACTGTACTGCGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTGACTCAGCGAAAGAAGGTCTCACAGGTAATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAGGGAATGAATTTGTTGAGTTTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCCGAATCTAAGCAAGGATTTGTCCAAATCGGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTAAGCAATATTATC
GAAAAAGTCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGAAAAGAATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

46.302

97.492

0.451
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.338

97.492

0.442
  coiA Streptococcus pneumoniae D39

45.338

97.492

0.442
  coiA Streptococcus pneumoniae R6

45.338

97.492

0.442
  coiA Lactococcus lactis subsp. cremoris KW2

35.758

100

0.37