Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QYQ96_RS01300 Genome accession   NZ_CP129421
Coordinates   274302..274880 (+) Length   192 a.a.
NCBI ID   WP_258462896.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 269302..279880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS01285 (QYQ96_01285) oxyR 269687..270580 (+) 894 WP_001025913.1 DNA-binding transcriptional regulator OxyR -
  QYQ96_RS01290 (QYQ96_01290) - 270677..273154 (-) 2478 WP_055027426.1 penicillin-binding protein 1A -
  QYQ96_RS01295 (QYQ96_01295) pilM 273296..274312 (+) 1017 WP_304572399.1 type IV pilus assembly protein PilM Machinery gene
  QYQ96_RS01300 (QYQ96_01300) pilN 274302..274880 (+) 579 WP_258462896.1 PilN domain-containing protein Machinery gene
  QYQ96_RS01305 (QYQ96_01305) pilO 274873..275463 (+) 591 WP_000135851.1 type 4a pilus biogenesis protein PilO Machinery gene
  QYQ96_RS01310 (QYQ96_01310) pilP 275453..275971 (+) 519 WP_000794742.1 pilus assembly protein PilP Machinery gene
  QYQ96_RS01315 (QYQ96_01315) pilQ 275997..277712 (+) 1716 WP_055029207.1 type IV pilus secretin PilQ Machinery gene
  QYQ96_RS01320 (QYQ96_01320) aroK 277899..278423 (+) 525 WP_000818614.1 shikimate kinase AroK -
  QYQ96_RS01325 (QYQ96_01325) aroB 278451..279536 (+) 1086 WP_000439816.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21951.31 Da        Isoelectric Point: 9.9269

>NTDB_id=853133 QYQ96_RS01300 WP_258462896.1 274302..274880(+) (pilN) [Vibrio metoecus strain ZF102]
MLHNINLLPWRDERREAHKRRFLGLVILGVLLAVLMQFGAGEYLSGQVAKQQERIGYLKQHIFSLDQQIAKLKVTEEEHK
ALLTRLNVVEQLQQKRNKTTDFMNQMPLLIPEGVYVDKIKMNGHEIEISGISDSTARLATMLDNLEKSPKLSDVEMHEIV
SGNKRFGKQFQSFKVSFQFLRSDSTQGGTNNG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=853133 QYQ96_RS01300 WP_258462896.1 274302..274880(+) (pilN) [Vibrio metoecus strain ZF102]
ATGCTGCATAACATTAACTTATTGCCATGGCGAGATGAGCGGCGCGAAGCACATAAACGGCGCTTTTTGGGGTTAGTGAT
TTTAGGCGTGCTGTTGGCAGTATTGATGCAGTTTGGTGCTGGAGAATATTTAAGTGGTCAGGTCGCCAAACAACAAGAAC
GGATTGGTTATTTGAAACAACACATCTTTTCGTTGGATCAGCAAATCGCCAAACTCAAAGTGACGGAAGAGGAACACAAG
GCATTGTTGACTCGCCTCAATGTTGTTGAGCAGTTACAGCAAAAACGCAATAAAACCACGGACTTTATGAATCAGATGCC
GCTGCTGATCCCTGAAGGCGTGTACGTCGATAAGATCAAAATGAATGGGCATGAAATCGAGATCTCGGGGATCAGTGACT
CTACAGCTCGCTTAGCGACCATGCTCGACAACTTAGAAAAATCCCCCAAGCTCAGTGACGTAGAAATGCATGAAATAGTC
TCGGGTAACAAACGCTTTGGTAAGCAATTTCAGAGCTTTAAAGTTTCCTTTCAATTCTTGAGGTCAGACTCGACACAAGG
TGGGACGAATAATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

85.567

100

0.865
  pilN Vibrio campbellii strain DS40M4

58.854

100

0.589