Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QYQ96_RS01295 Genome accession   NZ_CP129421
Coordinates   273296..274312 (+) Length   338 a.a.
NCBI ID   WP_304572399.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 268296..279312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS01280 (QYQ96_01280) - 268816..269547 (-) 732 WP_055035147.1 glutathione peroxidase -
  QYQ96_RS01285 (QYQ96_01285) oxyR 269687..270580 (+) 894 WP_001025913.1 DNA-binding transcriptional regulator OxyR -
  QYQ96_RS01290 (QYQ96_01290) - 270677..273154 (-) 2478 WP_055027426.1 penicillin-binding protein 1A -
  QYQ96_RS01295 (QYQ96_01295) pilM 273296..274312 (+) 1017 WP_304572399.1 type IV pilus assembly protein PilM Machinery gene
  QYQ96_RS01300 (QYQ96_01300) pilN 274302..274880 (+) 579 WP_258462896.1 PilN domain-containing protein Machinery gene
  QYQ96_RS01305 (QYQ96_01305) pilO 274873..275463 (+) 591 WP_000135851.1 type 4a pilus biogenesis protein PilO Machinery gene
  QYQ96_RS01310 (QYQ96_01310) pilP 275453..275971 (+) 519 WP_000794742.1 pilus assembly protein PilP Machinery gene
  QYQ96_RS01315 (QYQ96_01315) pilQ 275997..277712 (+) 1716 WP_055029207.1 type IV pilus secretin PilQ Machinery gene
  QYQ96_RS01320 (QYQ96_01320) aroK 277899..278423 (+) 525 WP_000818614.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37661.46 Da        Isoelectric Point: 7.2629

>NTDB_id=853132 QYQ96_RS01295 WP_304572399.1 273296..274312(+) (pilM) [Vibrio metoecus strain ZF102]
MGKSLVTGIDIGHHSIKAVVLKPMGDTYALMGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGLPLFSQKVAIAIPDNA
VISKVLQIDSDLELREQEFAIYQAFSHQSPFPVEDLSLDFVKVAEKNLARSSTTTFQVYATKKEVVESRLQASKKAGFEP
ILMDVQVHSLLHLWQLASRAYRRADWMLIDIGHTQSSLCLDFPDKIPFYKDVPLGTRLVDLDSANTSMLNPPQLHDSTQR
FINELVDKVARQIQLFTSVHGTQSLSGLWLSGGGAAMEGLPEALSQRLSLPCEVLNPFALFKMQVSKRKRQVVDGQRFST
AAGLALRGLAWLESEHAA

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=853132 QYQ96_RS01295 WP_304572399.1 273296..274312(+) (pilM) [Vibrio metoecus strain ZF102]
ATGGGTAAATCATTAGTTACGGGTATTGATATCGGCCACCACAGCATTAAAGCTGTGGTGCTCAAACCTATGGGCGACAC
CTATGCGCTTATGGGGTATGAGGAGTTGCTCGTTACCGCTGATATTTTCACCGATAATCACACGCTCGATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGGGTTACCCCTATTTAGTCAGAAAGTCGCGATTGCAATCCCGGATAACGCG
GTAATTAGCAAAGTATTACAAATAGATAGCGATCTTGAGCTACGAGAGCAGGAGTTCGCTATTTATCAGGCTTTTTCCCA
CCAATCTCCATTTCCCGTTGAAGATCTTAGCCTTGATTTCGTCAAAGTGGCGGAAAAAAATCTTGCACGCAGTAGTACGA
CGACGTTTCAAGTCTATGCCACCAAGAAAGAAGTGGTTGAAAGCCGCTTACAAGCCAGTAAAAAAGCAGGTTTTGAGCCG
ATCTTAATGGATGTGCAAGTGCACAGTTTGTTGCATCTATGGCAGTTGGCTAGCCGCGCGTATCGCCGTGCGGACTGGAT
GCTGATTGATATTGGACACACACAAAGCTCTTTGTGTTTGGACTTTCCAGACAAAATACCTTTTTACAAAGATGTGCCAC
TAGGAACTCGATTGGTCGATTTAGACTCTGCTAACACATCCATGCTCAATCCTCCCCAATTGCACGACTCGACTCAACGT
TTTATCAATGAATTGGTGGATAAAGTGGCGCGTCAAATCCAACTGTTTACGTCGGTGCATGGAACGCAAAGCCTCAGTGG
CTTATGGCTATCAGGCGGTGGTGCGGCGATGGAGGGATTGCCAGAAGCGTTGTCCCAGCGTTTATCTTTGCCTTGTGAAG
TGCTGAATCCTTTTGCGTTGTTCAAAATGCAGGTCTCAAAACGTAAACGCCAAGTGGTTGATGGTCAGCGTTTTAGCACT
GCAGCAGGGCTCGCTTTGCGTGGTTTAGCATGGCTGGAGAGTGAACATGCTGCATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(240-328)

Type IV pilus assembly protein PilM; (PilM_2)

(8-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

85.207

100

0.852
  pilM Vibrio campbellii strain DS40M4

49.112

100

0.491