Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QYQ96_RS01315 Genome accession   NZ_CP129421
Coordinates   275997..277712 (+) Length   571 a.a.
NCBI ID   WP_055029207.1    Uniprot ID   A0A0Q0TYL3
Organism   Vibrio metoecus strain ZF102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 270997..282712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS01295 (QYQ96_01295) pilM 273296..274312 (+) 1017 WP_304572399.1 type IV pilus assembly protein PilM Machinery gene
  QYQ96_RS01300 (QYQ96_01300) pilN 274302..274880 (+) 579 WP_258462896.1 PilN domain-containing protein Machinery gene
  QYQ96_RS01305 (QYQ96_01305) pilO 274873..275463 (+) 591 WP_000135851.1 type 4a pilus biogenesis protein PilO Machinery gene
  QYQ96_RS01310 (QYQ96_01310) pilP 275453..275971 (+) 519 WP_000794742.1 pilus assembly protein PilP Machinery gene
  QYQ96_RS01315 (QYQ96_01315) pilQ 275997..277712 (+) 1716 WP_055029207.1 type IV pilus secretin PilQ Machinery gene
  QYQ96_RS01320 (QYQ96_01320) aroK 277899..278423 (+) 525 WP_000818614.1 shikimate kinase AroK -
  QYQ96_RS01325 (QYQ96_01325) aroB 278451..279536 (+) 1086 WP_000439816.1 3-dehydroquinate synthase -
  QYQ96_RS01330 (QYQ96_01330) - 279590..281068 (+) 1479 WP_304572400.1 AAA family ATPase -
  QYQ96_RS01335 (QYQ96_01335) - 281138..281971 (+) 834 WP_000744677.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 62380.50 Da        Isoelectric Point: 4.7319

>NTDB_id=853136 QYQ96_RS01315 WP_055029207.1 275997..277712(+) (pilQ) [Vibrio metoecus strain ZF102]
MRNGLKTYVAQAWLTLWVGLVLCAASVAHSAESASTNQLQNIDFRVNKDKAAVLIVELASPSVVVDVQKVQEGLSIELLK
TDVADDKLYLLDVKDFSTPVQSIEVFRKEPSTQLIATIDGEFKHDYSLKGKYLEVVISKLKADEKPQPKSILEKEGKLIS
INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQ
VQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGSIESNLWQQGLLADDKFPVDQFLNVNLASTSANASSIAFQVAKLG
SDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVSFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL
LIFVTPKVVIQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=853136 QYQ96_RS01315 WP_055029207.1 275997..277712(+) (pilQ) [Vibrio metoecus strain ZF102]
ATGAGAAATGGATTAAAAACTTATGTCGCACAGGCTTGGCTGACCTTATGGGTTGGTTTGGTGCTTTGTGCTGCTTCCGT
AGCGCATAGCGCGGAGTCGGCTTCTACCAATCAACTGCAAAATATTGATTTTCGGGTCAATAAAGACAAAGCCGCAGTGC
TGATTGTGGAGTTGGCTTCCCCCTCTGTTGTCGTGGATGTTCAAAAAGTCCAAGAAGGGCTGAGTATTGAACTGCTAAAA
ACGGATGTGGCAGATGACAAACTTTACTTATTGGATGTAAAGGACTTTTCTACGCCAGTGCAAAGCATAGAAGTGTTCCG
CAAAGAACCCAGCACTCAATTGATTGCGACCATTGATGGTGAGTTTAAACATGACTACAGCTTGAAAGGAAAATATTTGG
AGGTGGTGATCAGTAAGCTTAAAGCGGATGAAAAACCACAGCCGAAAAGTATTCTAGAGAAAGAAGGTAAGCTCATTTCA
ATTAACTTCCAAGATATTCCAGTGCGTAACGTGTTGCAGCTGATTGCCGATTATAACGGCTTCAACTTAGTAGTATCGGA
CTCGGTGGTCGGTAACCTGACGTTACGCTTGGATGGGGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAGG
GCTTAGATAAGCGTGTTGATGGTAACGTTATTCTCATCGCACCCAAAGAAGAACTGGATTTACGAGAAAAGCAGGCCTTA
GAGAAAGCGCGTTTAGCGGAAGAGCTGGGTGATTTAAAATCCGAAATCATCAAAATCAATTTTGCTAAAGCTTCAGATAT
CGCCGCCATGATCGGGGGAGAAGGTAACGTTAACATGCTCTCTGAGCGTGGTTCGATCAGCATCGATGAGCGTACGAACT
CACTGTTGATCCGAGAGTTACCCGATAATATTGCCGTGATCCGTGAGATCATCGAATCGCTGGATATTCCGGTCAAGCAA
GTGCAAATTGAAGCACGTATCGTCACCGTCAAAGAAGGTAACTTGGATGAGCTGGGTGTGCGTTGGGGCGTAATGTCAAC
CAATGGTAGTCATTCGGTCGGCGGGAGTATTGAAAGTAACTTATGGCAACAAGGGCTTTTGGCTGACGATAAGTTTCCGG
TCGATCAGTTCTTAAACGTCAATTTAGCATCCACTTCAGCGAACGCTTCCTCCATCGCTTTCCAAGTGGCTAAGCTAGGG
TCCGATACCTTGTTGGATTTGGAGCTTTCCGCATTACAAAACGAGTCGAAAGCAGAAATTATCTCTAGCCCCCGTTTGAT
TACGACCAATAAACAGCCTGCGTACATCGAACAGGGTACTGAAATTCCATACCTTGAGTCCTCATCGAGTGGGGCCTCTA
CGGTATCGTTTAAAAAAGCGGTATTGAGCTTGAAAGTTACCCCACAAATTACACCTGATAACCGTCTGGTGTTGGATTTG
AGTGTGACTCAGGACCGCCGTGGTGAAACGGTGAAAACCGGTACAGGGGAAGCGGTCTCGATCGACACTCAGCGTATTGG
CACACAAGTGTTAGTGAATAATGGAGAAACTGTCGTCTTAGGTGGCATTTTCCAACACAGCATCAATAATTCAGTGGATA
AGGTGCCATTGCTTGGAGACCTGCCAGTTTTGGGTGCGCTATTTAGACGAACGTACGAGCAAATGGGCAAAAGTGAGCTG
TTGATTTTCGTCACGCCGAAAGTGGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(411-569)

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0TYL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

95.271

100

0.953
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

95.271

100

0.953
  pilQ Vibrio campbellii strain DS40M4

78.909

96.322

0.76
  pilQ Legionella pneumophila strain ERS1305867

42.989

94.921

0.408
  pilQ Legionella pneumophila strain Lp02

42.989

94.921

0.408
  comQ Acinetobacter baylyi ADP1

39.619

100

0.401
  pilQ Acinetobacter baumannii D1279779

38.055

100

0.391
  pilQ Acinetobacter baumannii strain A118

38.055

100

0.391
  pilQ Pseudomonas aeruginosa PAK

39.13

96.673

0.378