Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   L6434_RS00810 Genome accession   NZ_AP024488
Coordinates   183089..183439 (+) Length   116 a.a.
NCBI ID   WP_255718978.1    Uniprot ID   -
Organism   Desulfoluna limicola strain ASN36     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 178089..188439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6434_RS00780 (DSLASN_01570) - 178207..178353 (-) 147 WP_236890839.1 hypothetical protein -
  L6434_RS00785 (DSLASN_01580) - 178762..179574 (+) 813 WP_236890840.1 hypothetical protein -
  L6434_RS00790 (DSLASN_01590) - 179576..180025 (+) 450 WP_236890841.1 hypothetical protein -
  L6434_RS00795 (DSLASN_01610) - 180429..180650 (-) 222 WP_255718976.1 phage antirepressor N-terminal domain-containing protein -
  L6434_RS00800 (DSLASN_01620) - 180974..181759 (+) 786 WP_236890843.1 hypothetical protein -
  L6434_RS00805 (DSLASN_01640) - 182303..182968 (+) 666 WP_236890844.1 hypothetical protein -
  L6434_RS00810 (DSLASN_01650) ideA 183089..183439 (+) 351 WP_255718978.1 endonuclease Regulator
  L6434_RS00815 (DSLASN_01660) - 183556..184428 (+) 873 WP_236890846.1 hypothetical protein -
  L6434_RS00820 (DSLASN_01680) - 184842..186767 (-) 1926 WP_236890847.1 terminase gpA endonuclease subunit -
  L6434_RS00825 (DSLASN_01690) - 186764..187312 (-) 549 WP_236890848.1 hypothetical protein -
  L6434_RS00830 (DSLASN_01700) - 187320..187742 (-) 423 WP_236890849.1 hypothetical protein -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13485.28 Da        Isoelectric Point: 7.1336

>NTDB_id=85311 L6434_RS00810 WP_255718978.1 183089..183439(+) (ideA) [Desulfoluna limicola strain ASN36]
MEADMYNLVPAVGEINGLRSNYSYSMISGERREFGSCDMEIENKKAEPPPHIRGDIARAYMCMNWAYPGRGIISRKNKKL
FEAWNKVDPVDKWEHERSLRIEAIQGNKNPFVNYNE

Nucleotide


Download         Length: 351 bp        

>NTDB_id=85311 L6434_RS00810 WP_255718978.1 183089..183439(+) (ideA) [Desulfoluna limicola strain ASN36]
ATGGAAGCAGATATGTATAATTTGGTACCAGCAGTTGGAGAGATCAACGGCCTTAGATCCAATTACAGCTATTCAATGAT
CTCAGGGGAAAGAAGAGAGTTTGGAAGTTGTGATATGGAAATTGAAAACAAGAAAGCAGAGCCCCCTCCACATATCAGGG
GTGACATTGCCAGAGCCTATATGTGCATGAATTGGGCTTATCCTGGACGTGGTATCATCAGTAGGAAGAACAAAAAACTG
TTTGAAGCATGGAATAAAGTAGATCCAGTGGATAAATGGGAACACGAACGAAGCCTGAGGATTGAGGCTATTCAAGGAAA
TAAGAATCCATTCGTTAATTACAATGAATAG

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(1-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

49.565

99.138

0.491
  dns Vibrio parahaemolyticus RIMD 2210633

48.276

100

0.483
  dns Aliivibrio fischeri ES114

47.826

99.138

0.474
  dns Vibrio cholerae strain A1552

45.217

99.138

0.448
  dns Campylobacter jejuni RM1221

39.815

93.103

0.371

Multiple sequence alignment