Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   V6T26_RS06285 Genome accession   NZ_CP145858
Coordinates   1387133..1387789 (+) Length   218 a.a.
NCBI ID   WP_073685358.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382133..1392789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS06255 (V6T26_06255) - 1382422..1382691 (-) 270 WP_002890660.1 DUF3165 family protein -
  V6T26_RS06260 (V6T26_06260) typA 1382711..1384561 (-) 1851 WP_002884130.1 translational GTPase TypA -
  V6T26_RS06265 (V6T26_06265) - 1384702..1385670 (-) 969 WP_037600464.1 ROK family glucokinase -
  V6T26_RS06270 (V6T26_06270) - 1385663..1385869 (-) 207 WP_002890657.1 YqgQ family protein -
  V6T26_RS06275 (V6T26_06275) - 1385977..1386414 (-) 438 WP_002884117.1 Fur family transcriptional regulator -
  V6T26_RS06280 (V6T26_06280) - 1386502..1387023 (-) 522 WP_049545835.1 Dps family protein -
  V6T26_RS06285 (V6T26_06285) cclA/cilC 1387133..1387789 (+) 657 WP_073685358.1 prepilin peptidase Machinery gene
  V6T26_RS06290 (V6T26_06290) - 1387819..1389204 (-) 1386 WP_179969343.1 serine hydrolase -
  V6T26_RS06295 (V6T26_06295) sodA 1389303..1389908 (-) 606 WP_049545964.1 superoxide dismutase SodA -
  V6T26_RS06300 (V6T26_06300) holA 1390004..1391038 (-) 1035 WP_410541094.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25159.30 Da        Isoelectric Point: 7.4775

>NTDB_id=853073 V6T26_RS06285 WP_073685358.1 1387133..1387789(+) (cclA/cilC) [Streptococcus salivarius strain KSS11]
MLSIIYFFLGASLGSFIGLVCDRFPENSIIFPSSHCSHCEHQLRFSEMIPILSQLFLKSRCRSCQSPIPFRYLFMEIFCG
IICLLYFYDFLNLEVTYFLYFSLCLSIFDLKQKSYPLLIWIVGTVPLLFMGNYYLTFAIGIILAFLSFIKHLNIGEGDFL
YLASASLIFPFSKILLTIELACLLGLAYFLIRRNLKECIAFVPFLFLGIVLLTFYSIV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=853073 V6T26_RS06285 WP_073685358.1 1387133..1387789(+) (cclA/cilC) [Streptococcus salivarius strain KSS11]
ATGTTAAGCATTATTTATTTTTTTCTAGGAGCCTCTTTAGGCTCATTTATCGGACTAGTTTGTGATCGTTTTCCTGAGAA
CTCGATTATTTTTCCTAGTAGTCACTGTAGCCATTGCGAGCATCAGTTGCGTTTTTCCGAGATGATTCCTATCCTCTCAC
AACTTTTCTTAAAATCTCGATGTCGTTCATGTCAGTCTCCTATACCTTTTCGTTACCTCTTTATGGAAATATTTTGTGGG
ATAATATGTCTTCTATATTTCTATGACTTTTTAAATCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCTAT
TTTTGATTTGAAACAGAAATCCTATCCACTTCTGATCTGGATAGTTGGAACAGTCCCACTCCTATTCATGGGCAACTATT
ACCTCACATTTGCCATAGGGATAATCCTCGCTTTCCTTTCTTTTATAAAACATCTAAATATTGGGGAAGGTGATTTTCTC
TACTTAGCAAGTGCCTCACTTATTTTCCCATTTTCAAAAATACTTCTAACTATCGAGCTTGCGTGCCTATTAGGGCTAGC
GTACTTCCTTATACGAAGAAATCTTAAGGAATGTATCGCATTTGTCCCATTTCTTTTTCTAGGGATTGTACTTCTTACCT
TTTATTCAATTGTATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

98.165

0.385
  cclA/cilC Streptococcus pneumoniae TIGR4

38.785

98.165

0.381
  cclA/cilC Streptococcus mitis NCTC 12261

37.85

98.165

0.372
  cclA/cilC Streptococcus pneumoniae Rx1

37.85

98.165

0.372
  cclA/cilC Streptococcus pneumoniae D39

37.85

98.165

0.372
  cclA/cilC Streptococcus pneumoniae R6

37.85

98.165

0.372