Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYM03_RS18560 Genome accession   NZ_CP129401
Coordinates   4160542..4161258 (-) Length   238 a.a.
NCBI ID   WP_044735256.1    Uniprot ID   -
Organism   Shewanella algae strain MCCC 1A11468     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4155542..4166258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM03_RS18550 (QYM03_18550) - 4158318..4159232 (-) 915 WP_301560915.1 LysR family transcriptional regulator -
  QYM03_RS18555 (QYM03_18555) - 4159358..4160467 (+) 1110 WP_301560916.1 HisA/HisF-related TIM barrel protein -
  QYM03_RS18560 (QYM03_18560) ssb 4160542..4161258 (-) 717 WP_044735256.1 single-stranded DNA-binding protein Machinery gene
  QYM03_RS18565 (QYM03_18565) - 4161293..4162660 (-) 1368 WP_025010184.1 MFS transporter -
  QYM03_RS18570 (QYM03_18570) uvrA 4162881..4165703 (+) 2823 WP_301560917.1 excinuclease ABC subunit UvrA -
  QYM03_RS18575 (QYM03_18575) - 4165711..4166061 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26172.53 Da        Isoelectric Point: 5.9130

>NTDB_id=853018 QYM03_RS18560 WP_044735256.1 4160542..4161258(-) (ssb) [Shewanella algae strain MCCC 1A11468]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 717 bp        

>NTDB_id=853018 QYM03_RS18560 WP_044735256.1 4160542..4161258(-) (ssb) [Shewanella algae strain MCCC 1A11468]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGCGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAGCAACAGTACAACGCGCCGCAGCAGCAAAGCTATGG
TCAGCAGCAGAACTCAGGTTATGCGCCTAAGCCACAGCAGCCAGCGCCGCAACAACAGGCAGCTCCGCAACAGCGGCCGG
CACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.538
  ssb Glaesserella parasuis strain SC1401

46.383

98.739

0.458
  ssb Neisseria gonorrhoeae MS11

42.489

97.899

0.416
  ssb Neisseria meningitidis MC58

41.631

97.899

0.408