Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   V6T01_RS03940 Genome accession   NZ_CP145856
Coordinates   775061..775717 (-) Length   218 a.a.
NCBI ID   WP_073685358.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 770061..780717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS03925 (V6T01_03910) holA 771812..772846 (+) 1035 WP_410541094.1 DNA polymerase III subunit delta -
  V6T01_RS03930 (V6T01_03915) sodA 772942..773547 (+) 606 WP_049545964.1 superoxide dismutase SodA -
  V6T01_RS03935 (V6T01_03920) - 773646..775031 (+) 1386 WP_179969343.1 serine hydrolase -
  V6T01_RS03940 (V6T01_03925) cclA/cilC 775061..775717 (-) 657 WP_073685358.1 prepilin peptidase Machinery gene
  V6T01_RS03945 (V6T01_03930) - 775827..776348 (+) 522 WP_049545835.1 Dps family protein -
  V6T01_RS03950 (V6T01_03935) - 776436..776873 (+) 438 WP_002884117.1 Fur family transcriptional regulator -
  V6T01_RS03955 (V6T01_03940) - 776981..777187 (+) 207 WP_002890657.1 YqgQ family protein -
  V6T01_RS03960 (V6T01_03945) - 777180..778148 (+) 969 WP_037600464.1 ROK family glucokinase -
  V6T01_RS03965 (V6T01_03950) typA 778289..780139 (+) 1851 WP_002884130.1 translational GTPase TypA -
  V6T01_RS03970 (V6T01_03955) - 780159..780428 (+) 270 WP_002890660.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25159.30 Da        Isoelectric Point: 7.4775

>NTDB_id=852935 V6T01_RS03940 WP_073685358.1 775061..775717(-) (cclA/cilC) [Streptococcus salivarius strain KSS1]
MLSIIYFFLGASLGSFIGLVCDRFPENSIIFPSSHCSHCEHQLRFSEMIPILSQLFLKSRCRSCQSPIPFRYLFMEIFCG
IICLLYFYDFLNLEVTYFLYFSLCLSIFDLKQKSYPLLIWIVGTVPLLFMGNYYLTFAIGIILAFLSFIKHLNIGEGDFL
YLASASLIFPFSKILLTIELACLLGLAYFLIRRNLKECIAFVPFLFLGIVLLTFYSIV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=852935 V6T01_RS03940 WP_073685358.1 775061..775717(-) (cclA/cilC) [Streptococcus salivarius strain KSS1]
ATGTTAAGCATTATTTATTTTTTTCTAGGAGCCTCTTTAGGCTCATTTATCGGACTAGTTTGTGATCGTTTTCCTGAGAA
CTCGATTATTTTTCCTAGTAGTCACTGTAGCCATTGCGAGCATCAGTTGCGTTTTTCCGAGATGATTCCTATCCTCTCAC
AACTTTTCTTAAAATCTCGATGTCGTTCATGTCAGTCTCCTATACCTTTTCGTTACCTCTTTATGGAAATATTTTGTGGG
ATAATATGTCTTCTATATTTCTATGACTTTTTAAATCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCTAT
TTTTGATTTGAAACAGAAATCCTATCCACTTCTGATCTGGATAGTTGGAACAGTCCCACTCCTATTCATGGGCAACTATT
ACCTCACATTTGCCATAGGGATAATCCTCGCTTTCCTTTCTTTTATAAAACATCTAAATATTGGGGAAGGTGATTTTCTC
TACTTAGCAAGTGCCTCACTTATTTTCCCATTTTCAAAAATACTTCTAACTATCGAGCTTGCGTGCCTATTAGGGCTAGC
GTACTTCCTTATACGAAGAAATCTTAAGGAATGTATCGCATTTGTCCCATTTCTTTTTCTAGGGATTGTACTTCTTACCT
TTTATTCAATTGTATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

98.165

0.385
  cclA/cilC Streptococcus pneumoniae TIGR4

38.785

98.165

0.381
  cclA/cilC Streptococcus mitis NCTC 12261

37.85

98.165

0.372
  cclA/cilC Streptococcus pneumoniae Rx1

37.85

98.165

0.372
  cclA/cilC Streptococcus pneumoniae D39

37.85

98.165

0.372
  cclA/cilC Streptococcus pneumoniae R6

37.85

98.165

0.372