Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V6T01_RS02250 Genome accession   NZ_CP145856
Coordinates   427294..428253 (+) Length   319 a.a.
NCBI ID   WP_410541200.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 422294..433253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS02240 (V6T01_02230) - 422902..423642 (-) 741 WP_410541202.1 CPBP family intramembrane glutamic endopeptidase -
  V6T01_RS02245 (V6T01_02235) - 424053..425990 (+) 1938 WP_410541676.1 GbpC/Spa domain-containing protein -
  V6T01_RS02250 (V6T01_02240) coiA 427294..428253 (+) 960 WP_410541200.1 competence protein CoiA Machinery gene
  V6T01_RS02255 (V6T01_02245) pepF 428264..430069 (+) 1806 WP_410541199.1 oligoendopeptidase F Regulator
  V6T01_RS02260 (V6T01_02250) - 430286..431506 (+) 1221 WP_060973368.1 OFA family MFS transporter -
  V6T01_RS02265 (V6T01_02255) - 431578..432285 (+) 708 WP_014633986.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38005.76 Da        Isoelectric Point: 9.6148

>NTDB_id=852919 V6T01_RS02250 WP_410541200.1 427294..428253(+) (coiA) [Streptococcus salivarius strain KSS1]
MLIAKNQEGDLVSALETSLQRKESYSCPGCQGVVLLRQGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
ERVCIENVLPKIGQIADLFVGDSLALEVQCSRLSQKRLRERTRAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKKEKIRLKYLIYEDIFGRVYYLTKTWSLTENLMTILRFPYQAERVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLRGMNLLCLSDQDFFPQVRFPESRQGFVQIRQSLEGFEKLFKQYYRKSHFSYRQTLYPPTFYAKIEKNRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=852919 V6T01_RS02250 WP_410541200.1 427294..428253(+) (coiA) [Streptococcus salivarius strain KSS1]
GTGTTAATTGCAAAAAATCAGGAGGGAGACCTCGTTTCAGCTCTAGAAACTAGTTTGCAACGTAAGGAATCCTACAGCTG
TCCGGGCTGTCAGGGAGTTGTCCTATTGAGGCAGGGGCAGGTAATGTGTCCGCATTTTGCTCATAAGTCTTTACAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAGCATTTATCCCTTAAGGCAGCCTTATATAAATCTTTGGTTAATCATGGT
GAAAGAGTTTGTATTGAAAATGTTCTGCCTAAGATAGGCCAGATTGCAGATTTATTTGTTGGCGATTCTTTAGCCCTGGA
AGTCCAGTGTTCTCGTCTATCACAGAAACGTTTAAGAGAACGCACACGCGCCTATCACCAAGCAGGTTATGAAGTGCGTT
GGCTTTTAGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACTTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCATCTATGGGAGCTTGATTGGAAGAAAGAGAAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTATTTAACTAAGACTTGGTCTTTAACAGAGAATCTCATGACGATTTTACGTTTTCCCTATCAAGCAGAGAGGG
TTGAGACCTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAGAAGCCTATCTTAGAGGAATGAATTTGTTATGTCTGTCTGATCAGGATTTTTTCCCACAAGTAAG
ATTTCCTGAATCTAGGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTAAGCAATATTATC
GAAAAAGTCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGAAAAGAATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

45.659

97.492

0.445
  coiA Streptococcus pneumoniae TIGR4

45.016

97.492

0.439
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439
  coiA Lactococcus lactis subsp. cremoris KW2

36.061

100

0.373