Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QYM22_RS24080 Genome accession   NZ_CP129342
Coordinates   4634757..4635269 (-) Length   170 a.a.
NCBI ID   WP_046129428.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4629757..4640269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS24055 (QYM22_24055) - 4630629..4630769 (-) 141 WP_046129426.1 hypothetical protein -
  QYM22_RS24060 (QYM22_24060) - 4630914..4631373 (+) 460 Protein_4715 spore coat protein -
  QYM22_RS24065 (QYM22_24065) - 4631422..4632882 (-) 1461 WP_082094031.1 SulP family inorganic anion transporter -
  QYM22_RS24070 (QYM22_24070) - 4633067..4634365 (+) 1299 WP_046129427.1 MFS transporter -
  QYM22_RS24075 (QYM22_24075) rpsR 4634474..4634713 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  QYM22_RS24080 (QYM22_24080) ssbA 4634757..4635269 (-) 513 WP_046129428.1 single-stranded DNA-binding protein SsbA Machinery gene
  QYM22_RS24085 (QYM22_24085) rpsF 4635315..4635602 (-) 288 WP_046129429.1 30S ribosomal protein S6 -
  QYM22_RS24090 (QYM22_24090) ychF 4635715..4636815 (-) 1101 WP_046129430.1 redox-regulated ATPase YchF -
  QYM22_RS24095 (QYM22_24095) - 4637005..4637211 (-) 207 WP_046129452.1 DUF951 domain-containing protein -
  QYM22_RS24100 (QYM22_24100) - 4637344..4638360 (-) 1017 WP_046129431.1 membrane protein -
  QYM22_RS24105 (QYM22_24105) yyaC 4638818..4639435 (+) 618 WP_046129432.1 spore protease YyaC -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18443.06 Da        Isoelectric Point: 4.7306

>NTDB_id=852522 QYM22_RS24080 WP_046129428.1 4634757..4635269(-) (ssbA) [Bacillus glycinifermentans strain SRCM12603]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVYVTEVQAESVQFLEPKGGGSGAGGYSGGQGGQYFGGGQNDQNPFGGGQSNQNRNQSNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=852522 QYM22_RS24080 WP_046129428.1 4634757..4635269(-) (ssbA) [Bacillus glycinifermentans strain SRCM12603]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCCAGCGGTGCGGCAGTTGC
CACCTTTACGCTCGCTGTAAACCGTACGTTTACGAATCAGCAGGGCGAACGTGAAGCAGATTTCATCAACTGTGTCGTTT
GGAGAAGACAAGCTGAAAATGTTGCGAATTTCCTTAAAAAAGGAAGCCTTGCGGGTGTAGATGGACGTTTGCAAACGAGG
AACTACGAAAATCAGCAAGGACAGCGCGTATATGTGACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTGCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAGTACTTTGGCGGCGGACAAAACGATCAGAATCCAT
TTGGCGGCGGTCAGAGCAATCAGAATCGCAATCAAAGCAACAGCTTTAATGACGATCCATTTGCAAACGACGGCAAACCG
ATTGACATCTCAGATGATGACTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.302

100

0.853
  ssb Latilactobacillus sakei subsp. sakei 23K

60.116

100

0.612
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

34.615

100

0.371