Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JUNP479_RS10100 Genome accession   NZ_AP024466
Coordinates   2244348..2244926 (+) Length   192 a.a.
NCBI ID   WP_033116044.1    Uniprot ID   A0AAQ0J003
Organism   Aeromonas jandaei strain JUNP479     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2239348..2249926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JUNP479_RS10090 (JUNP479_2052) - 2239364..2241037 (-) 1674 WP_203977657.1 sensor domain-containing diguanylate cyclase -
  JUNP479_RS10095 (JUNP479_2053) uvrA 2241149..2243977 (-) 2829 WP_203977659.1 excinuclease ABC subunit UvrA -
  JUNP479_RS10100 (JUNP479_2054) ssb 2244348..2244926 (+) 579 WP_033116044.1 single-stranded DNA-binding protein Machinery gene
  JUNP479_RS10105 (JUNP479_2055) - 2245091..2246416 (+) 1326 WP_203977661.1 site-specific integrase -
  JUNP479_RS10110 (JUNP479_2056) - 2246409..2247977 (+) 1569 WP_203977663.1 site-specific integrase -
  JUNP479_RS10115 (JUNP479_2057) - 2247987..2249864 (+) 1878 WP_239104619.1 integrase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21259.77 Da        Isoelectric Point: 5.9301

>NTDB_id=85240 JUNP479_RS10100 WP_033116044.1 2244348..2244926(+) (ssb) [Aeromonas jandaei strain JUNP479]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQQGGWGQPQQAMQQPMNQQRPAAAPQQNMQ
QQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=85240 JUNP479_RS10100 WP_033116044.1 2244348..2244926(+) (ssb) [Aeromonas jandaei strain JUNP479]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAAGTTTATGTC
GAAGGCAAACTGCAGACTCGCAAATGGCAAGATCAGAGCGGTCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
TACCGGCGTCATGCAGATGCTGGGGGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAGCAAGGTG
GCTGGGGTCAGCCGCAGCAAGCCATGCAGCAGCCGATGAACCAGCAGCGTCCGGCCGCCGCACCGCAGCAAAACATGCAG
CAGCAGGGTGGCTACGGCCGTCCGGCCCAGCAGCCCCAGTCTGCCCCGCCGGTCTACAACGAGCCGCCGATGGATTTCGA
CGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.192

100

0.714
  ssb Glaesserella parasuis strain SC1401

54.974

99.479

0.547
  ssb Neisseria gonorrhoeae MS11

47.619

98.438

0.469
  ssb Neisseria meningitidis MC58

47.09

98.438

0.464

Multiple sequence alignment