Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QYC34_RS13980 Genome accession   NZ_CP129338
Coordinates   2594292..2595362 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain SRCM126725     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2589292..2600362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS13935 (QYC34_13935) tapA 2589770..2590531 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  QYC34_RS13940 (QYC34_13940) yqzG 2590803..2591129 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QYC34_RS13945 (QYC34_13945) spoIITA 2591171..2591350 (-) 180 WP_029726723.1 YqzE family protein -
  QYC34_RS13950 (QYC34_13950) comGG 2591422..2591796 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  QYC34_RS13955 (QYC34_13955) comGF 2591797..2592180 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  QYC34_RS13960 (QYC34_13960) comGE 2592206..2592553 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  QYC34_RS13965 (QYC34_13965) comGD 2592537..2592968 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  QYC34_RS13970 (QYC34_13970) comGC 2592958..2593254 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QYC34_RS13975 (QYC34_13975) comGB 2593268..2594305 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  QYC34_RS13980 (QYC34_13980) comGA 2594292..2595362 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  QYC34_RS13985 (QYC34_13985) - 2595574..2595771 (-) 198 WP_046160584.1 CBS domain-containing protein -
  QYC34_RS13990 (QYC34_13990) corA 2595773..2596726 (-) 954 WP_046160585.1 magnesium transporter CorA -
  QYC34_RS13995 (QYC34_13995) yqhB 2596869..2598197 (+) 1329 WP_046160586.1 hemolysin family protein -
  QYC34_RS14000 (QYC34_14000) rsbRD 2598250..2599086 (-) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -
  QYC34_RS14010 (QYC34_14010) mgsR 2599310..2599690 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  QYC34_RS14015 (QYC34_14015) yqgY 2599922..2600167 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=852349 QYC34_RS13980 WP_004399124.1 2594292..2595362(-) (comGA) [Bacillus subtilis strain SRCM126725]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=852349 QYC34_RS13980 WP_004399124.1 2594292..2595362(-) (comGA) [Bacillus subtilis strain SRCM126725]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGGAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1