Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QYR55_RS07550 Genome accession   NZ_CP129328
Coordinates   1525097..1525789 (-) Length   230 a.a.
NCBI ID   WP_367561281.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 1-19     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520097..1530789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR55_RS07530 (QYR55_07535) dnaI 1520892..1521794 (-) 903 WP_367561465.1 primosomal protein DnaI -
  QYR55_RS07535 (QYR55_07540) - 1521795..1522983 (-) 1189 Protein_1432 helicase loader -
  QYR55_RS07540 (QYR55_07545) nrdR 1522967..1523461 (-) 495 WP_003101666.1 transcriptional regulator NrdR -
  QYR55_RS07545 (QYR55_07550) - 1523607..1525094 (-) 1488 WP_037584827.1 HAMP domain-containing histidine kinase -
  QYR55_RS07550 (QYR55_07555) covR 1525097..1525789 (-) 693 WP_367561281.1 two-component system response regulator CovR Regulator
  QYR55_RS07555 (QYR55_07560) - 1526011..1526544 (-) 534 WP_003101669.1 DUF177 domain-containing protein -
  QYR55_RS07560 (QYR55_07565) htpX 1526732..1527628 (-) 897 WP_367562551.1 zinc metalloprotease HtpX -
  QYR55_RS07565 (QYR55_07570) - 1527667..1528224 (-) 558 WP_367561467.1 LemA family protein -
  QYR55_RS07570 (QYR55_07575) rsmG 1528369..1529085 (+) 717 WP_003101672.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QYR55_RS07575 (QYR55_07580) ktrB 1529177..1530538 (+) 1362 WP_017794720.1 potassium uptake transporter channel subunit KtrB -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26976.89 Da        Isoelectric Point: 4.5562

>NTDB_id=852270 QYR55_RS07550 WP_367561281.1 1525097..1525789(-) (covR) [Streptococcus iniae strain Si 1-19]
MEYDKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLDTALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMM
MTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETEKKSPNQGIYRDLVLNPQNRSVNRGDEEISLTKR
EYDLLNILMSNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDMQGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 693 bp        

>NTDB_id=852270 QYR55_RS07550 WP_367561281.1 1525097..1525789(-) (covR) [Streptococcus iniae strain Si 1-19]
ATAGAATATGACAAAAAAATTCTAATTGTTGAAGATGAAAAAAATCTTGCAAGGTTTGTTTCATTAGAATTGCAACACGA
AGGTTACGAAGTAACTGTAGAAGTGAATGGTCGTGAAGGACTTGACACAGCGCTTGAAAAAGATTTTGATTTAATCTTGC
TTGATTTGATGTTACCTGAAATGGATGGTTTTGAAGTGACCCGTCGTCTTCAAACTGAAAAAACAACCTACATTATGATG
ATGACAGCACGCGATTCTATCATGGACGTGGTTGCTGGTTTGGATCGTGGTGCAGATGATTATATTGTTAAGCCATTTGC
TATTGAAGAATTATTGGCACGTATTCGTGCAATTTTCCGTCGTCAAGATATTGAAACTGAGAAAAAATCTCCTAATCAAG
GTATTTACCGTGATTTAGTCTTAAATCCACAAAACCGTTCTGTAAACCGTGGAGATGAAGAAATTTCATTGACAAAACGC
GAATATGATTTGTTAAACATTTTAATGAGCAATATGAATCGTGTCATGACGCGTGAAGAGTTGCTGTCAAATGTTTGGAA
ATACGATGAAGCTGTTGAAACAAACGTTGTTGACGTGTATATTCGTTACCTACGTGGAAAAATCGATATGCAAGGACGTG
AGTCCTATATTCAAACTGTTCGTGGAATGGGATATGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.819

98.696

0.817
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.814

98.261

0.657
  vicR Streptococcus mutans UA159

43.29

100

0.435
  micA Streptococcus pneumoniae Cp1015

43.043

100

0.43