Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Pta6605_RS24905 Genome accession   NZ_AP024464
Coordinates   5608932..5610269 (+) Length   445 a.a.
NCBI ID   WP_016982716.1    Uniprot ID   A0A0P9PT90
Organism   Pseudomonas amygdali pv. tabaci strain 6605     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5603932..5615269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pta6605_RS24880 (Pta6605_50090) pgeF 5604119..5604847 (-) 729 WP_016981940.1 peptidoglycan editing factor PgeF -
  Pta6605_RS24885 (Pta6605_50100) rluD 5604844..5605806 (-) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Pta6605_RS24890 (Pta6605_50110) - 5605956..5606978 (+) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  Pta6605_RS24895 (Pta6605_50120) - 5607108..5607347 (+) 240 WP_002551997.1 PP0621 family protein -
  Pta6605_RS24900 (Pta6605_50130) pilS 5607337..5608929 (+) 1593 WP_005777807.1 sensor histidine kinase Regulator
  Pta6605_RS24905 (Pta6605_50140) pilR 5608932..5610269 (+) 1338 WP_016982716.1 sigma-54-dependent transcriptional regulator Regulator
  Pta6605_RS24910 (Pta6605_50150) - 5611561..5612178 (+) 618 WP_005777803.1 TetR/AcrR family transcriptional regulator -
  Pta6605_RS24915 (Pta6605_50170) - 5612260..5613369 (+) 1110 WP_005777802.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49771.86 Da        Isoelectric Point: 6.6378

>NTDB_id=85226 Pta6605_RS24905 WP_016982716.1 5608932..5610269(+) (pilR) [Pseudomonas amygdali pv. tabaci strain 6605]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGTQPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEHSGPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=85226 Pta6605_RS24905 WP_016982716.1 5608932..5610269(+) (pilR) [Pseudomonas amygdali pv. tabaci strain 6605]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCCTTGAGCTGGTGCAGCATATTCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
TGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTTGTAGCGCGGCTCATCCACGAGCAGGGTCCGCGCATCGATAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCTGGTCTGTTTCAGGCGGCACATACCGGGACGCTGTTTCTCGACGAGGTGGCCGACCTACCG
CTGGCCATGCAGGTAAAGCTGTTGCGAGCCATCCAGGAAAAATCCATCCGCAGCGTAGGCAGCCAGCAAGAACAGATTGT
GGACGTACGCATTCTGTGCGCCACGCACAAGAACCTTAATGCAGAGGTTGCGGCAGGCCGTTTCCGTCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAACGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAAGCGACTTGCTGGCAATGGCACGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTGGACACGCTGAAGAGCTACCG
ATTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATCCACGCCA
GCGATCTGCGCCTGGCAGAGTCCGCCAGCCCCCAGGAGCACAGCGGTCCTAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCATCGAGCGCAAGCTCATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGCGGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9PT90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.703

99.775

0.775
  pilR Acinetobacter baumannii strain A118

48.491

100

0.506
  luxO Vibrio cholerae strain A1552

37.162

99.775

0.371

Multiple sequence alignment