Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   Pta6605_RS24900 Genome accession   NZ_AP024464
Coordinates   5607337..5608929 (+) Length   530 a.a.
NCBI ID   WP_005777807.1    Uniprot ID   A0A3M2YWJ1
Organism   Pseudomonas amygdali pv. tabaci strain 6605     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5602337..5613929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pta6605_RS24880 (Pta6605_50090) pgeF 5604119..5604847 (-) 729 WP_016981940.1 peptidoglycan editing factor PgeF -
  Pta6605_RS24885 (Pta6605_50100) rluD 5604844..5605806 (-) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Pta6605_RS24890 (Pta6605_50110) - 5605956..5606978 (+) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  Pta6605_RS24895 (Pta6605_50120) - 5607108..5607347 (+) 240 WP_002551997.1 PP0621 family protein -
  Pta6605_RS24900 (Pta6605_50130) pilS 5607337..5608929 (+) 1593 WP_005777807.1 sensor histidine kinase Regulator
  Pta6605_RS24905 (Pta6605_50140) pilR 5608932..5610269 (+) 1338 WP_016982716.1 sigma-54-dependent transcriptional regulator Regulator
  Pta6605_RS24910 (Pta6605_50150) - 5611561..5612178 (+) 618 WP_005777803.1 TetR/AcrR family transcriptional regulator -
  Pta6605_RS24915 (Pta6605_50170) - 5612260..5613369 (+) 1110 WP_005777802.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58001.84 Da        Isoelectric Point: 6.8650

>NTDB_id=85225 Pta6605_RS24900 WP_005777807.1 5607337..5608929(+) (pilS) [Pseudomonas amygdali pv. tabaci strain 6605]
MTADTPSLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
SLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEELNALILQRMRTGILVLDANRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRHWLVNPIMVPRSVTTSPIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQSGRIDRVIENVLQLSRRREAQPELLDLKTWLENFVAEFRSAAMAG
QSVHVEISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDQQSDLPILEVQDDGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=85225 Pta6605_RS24900 WP_005777807.1 5607337..5608929(+) (pilS) [Pseudomonas amygdali pv. tabaci strain 6605]
GTGACCGCTGACACGCCCTCGCTTGCCAGCCCACAGGCGCAAAGGATTCTGCGGCTTTACCACCTTTATCGGCTAACCAT
CGGCGTGGTACTGGTCCTGCTGATTTCCAGCAGTCTGGAAACCGAACTGTTGCAACTGGCCAATCCAAACCTGTTCCGCT
CGGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGTCCCAGCCGTCAGGCGCAGCTTTTC
AGTCTGGCAATGACTGACGCAATCATGCTCTCTGCGCTGTTCTACGCGGCGGGTGGCCCTTCCAGCGGCATCGGCAATCT
GTTGATTGCTTCCGTAGCAATCAGCAATGTATTGCTGCGGGGCCGTATCGGTTTGCTGATCGCCGCCGTTTCTGCCATCG
GCATTATCTACCTGACGTTCTATATCAGCTTCGGTACACCGTCGGTTTCCAACGACTACGTGCAGGCCGGCTCTCTGGGT
GCCCTGTGCTTCGCCGCCGCACTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAAGTGCTGGCCGAACAGCG
TGCAGCGGATGTCGACAGCCTTGAAGAACTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCGTCAGGTGCTGCTGGCCAATCAAGGTGCCCTTACCCTACTGGGCCATGAGCGACTGGTCGGCCAGGTTATCGAC
GCTTACTCGCCGCAACTGGTGGAACGCCTGCGCCACTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCGTCACGACTTC
ACCCATCGGGCCGGTGCTGCAACCGAGCTTTGCCGCGCTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTTGAAG
ACCTGTCGCAAATTGCTCATCAGGCGCAGCAGCTCAAGCTCGCCGCGCTGGGACGCCTGACCGCCGGGATTGCCCACGAG
ATACGCAACCCGCTGGGCGCAGTCAGCCATGCCGCACAGTTGCTCAACGAATCTGAAGAACTCAGCGCAGCGGACCGACG
CCTGGGGCAGATCATTCATGACCAGTCGGGGCGTATTGATCGGGTCATCGAAAATGTTCTGCAATTGTCGCGCAGACGCG
AAGCGCAGCCCGAACTGCTGGACCTGAAAACCTGGCTGGAAAACTTTGTTGCCGAGTTTCGCAGCGCCGCCATGGCCGGA
CAGTCGGTTCATGTCGAAATCAGTCCCGGCACGCTGACAACCCGCATGGATTCAGGGCAACTGACCCAGATCATGACCAA
CCTGCTACAGAACGGCCTGCGCTACAGCGGCAGAAATCATTCGTCAGCGCAGGTCTGGCTGAAGCTGCATCATGACCAAC
AAAGCGACTTGCCGATTCTGGAAGTGCAGGACGACGGGCCAGGGGTCAGCGAGCAACATTTGGCCAAGCTGTTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACCGGTCTTGGTCTATATCTGTCACGCGAGCTGTGCGAAAGCAATCAGGCGCACCT
GGAATACGTCCCGCGGCAAGGTGGCGGCAGTTGTCTGCGCATAACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M2YWJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.394

100

0.615

Multiple sequence alignment