Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   QYR55_RS04535 Genome accession   NZ_CP129328
Coordinates   916262..917572 (+) Length   436 a.a.
NCBI ID   WP_367562471.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 1-19     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 911262..922572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR55_RS04515 (QYR55_04515) pstB 911409..912167 (+) 759 WP_003099501.1 phosphate ABC transporter ATP-binding protein PstB -
  QYR55_RS04520 (QYR55_04520) phoU 912222..912875 (+) 654 WP_367562025.1 phosphate signaling complex protein PhoU -
  QYR55_RS04525 (QYR55_04525) - 912937..915474 (+) 2538 WP_367562742.1 M1 family metallopeptidase -
  QYR55_RS04530 (QYR55_04530) ciaR 915595..916269 (+) 675 WP_003099507.1 response regulator transcription factor Regulator
  QYR55_RS04535 (QYR55_04535) ciaH 916262..917572 (+) 1311 WP_367562471.1 HAMP domain-containing sensor histidine kinase Regulator
  QYR55_RS04540 (QYR55_04540) rpsT 917744..917986 (-) 243 WP_220701811.1 30S ribosomal protein S20 -
  QYR55_RS04545 (QYR55_04545) coaA 918046..918967 (-) 922 Protein_832 type I pantothenate kinase -
  QYR55_RS04550 (QYR55_04550) - 919228..919827 (+) 600 WP_003099513.1 class I SAM-dependent methyltransferase -
  QYR55_RS04555 (QYR55_04555) - 919814..921091 (+) 1278 WP_003099515.1 pyrimidine-nucleoside phosphorylase -
  QYR55_RS04560 (QYR55_04560) deoC 921103..921765 (+) 663 WP_367562743.1 deoxyribose-phosphate aldolase -
  QYR55_RS04565 (QYR55_04565) - 921737..922141 (+) 405 WP_230453495.1 cytidine deaminase -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49999.54 Da        Isoelectric Point: 9.1099

>NTDB_id=852259 QYR55_RS04535 WP_367562471.1 916262..917572(+) (ciaH) [Streptococcus iniae strain Si 1-19]
MANLKRIYQSDNFGHFFHFFAVFTGIFVVMTMIIIQIMQYGVYSSVDSSLLAVSKNSSVYANLTMERMTSFYFDNQEDAF
KNGTEVFKATLVEQPVANTDIILFSSNGTVLNSFDALSGFQNFTLKTNELNAIRTRKLMNFYGHEEKYHTLTVKIHSNRY
PAVAYLMAVVNVEQLDRANERYERIIVLVMITFWFISVLASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LETLFRKPNETILENSEPIASSLEEVRNMKILTTNLLNLARRDDGINPELVDVDASFFDAMFENFNLVAEDYGKDFHFEN
QVKRTIKMDKSLLKQLITILFDNALKYTDSDGQISISVRTTDKNLMVRVLDDGPGIKDMDKKKVFDRFYRVDKARTRTKG
GFGLGLSLAKQIVASLNGTISVKDNKPKGTIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=852259 QYR55_RS04535 WP_367562471.1 916262..917572(+) (ciaH) [Streptococcus iniae strain Si 1-19]
ATGGCTAATTTAAAACGTATTTACCAGTCAGATAATTTTGGGCATTTTTTCCATTTTTTTGCAGTCTTTACAGGAATATT
TGTTGTCATGACCATGATTATCATTCAAATCATGCAGTACGGTGTTTATTCTTCGGTAGATAGTAGTCTACTTGCTGTGT
CAAAAAATTCATCGGTTTATGCTAATTTAACCATGGAACGAATGACCTCATTTTACTTTGATAATCAAGAGGATGCTTTT
AAAAATGGAACTGAAGTCTTTAAAGCGACCTTAGTTGAACAACCAGTTGCCAATACGGATATTATCCTCTTTAGTTCTAA
CGGAACGGTTTTAAATAGCTTTGATGCGCTATCGGGTTTTCAAAATTTTACCTTAAAAACAAATGAATTAAATGCCATTC
GAACACGGAAATTGATGAATTTTTACGGGCATGAAGAAAAATACCATACGCTGACAGTTAAGATTCATTCCAATAGGTAC
CCAGCGGTGGCTTACCTAATGGCAGTTGTCAATGTGGAACAATTGGACCGTGCCAATGAGCGCTATGAACGAATCATTGT
TCTTGTTATGATAACTTTCTGGTTTATTTCTGTTTTGGCCAGTATATACCTTGCAAAATGGAGTCGTAAACCAATTCTTG
AAAGTTATGAGAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAATTAAGAACTCCCTTAGCAGTATTACAAAATCGC
TTAGAGACCCTGTTTAGAAAACCTAATGAAACAATTCTGGAAAACAGTGAACCAATTGCTTCGAGTTTAGAAGAAGTGCG
CAATATGAAGATCTTAACCACAAATTTATTGAATCTTGCCAGACGCGATGATGGGATTAATCCAGAACTCGTTGATGTGG
ATGCAAGCTTTTTTGACGCTATGTTTGAAAACTTCAACTTAGTAGCTGAAGATTATGGTAAAGACTTCCATTTTGAAAAT
CAGGTTAAGCGGACAATAAAAATGGATAAATCTTTATTAAAACAATTGATTACCATTTTATTTGATAATGCTTTGAAATA
CACGGACTCTGATGGGCAAATTTCAATTAGTGTTCGAACAACAGATAAAAATTTAATGGTCAGAGTGCTAGATGATGGTC
CTGGAATAAAAGACATGGATAAAAAGAAAGTTTTTGACCGCTTCTATCGTGTTGATAAGGCTAGAACACGTACTAAAGGT
GGATTTGGTTTGGGACTTTCTTTAGCAAAACAGATTGTTGCTTCCTTAAATGGAACAATATCAGTTAAAGACAATAAACC
AAAAGGGACAATATTTGAAGTTAAACTCTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.275

99.312

0.569
  ciaH Streptococcus pneumoniae Rx1

51.835

100

0.518
  ciaH Streptococcus pneumoniae D39

51.835

100

0.518
  ciaH Streptococcus pneumoniae R6

51.835

100

0.518
  ciaH Streptococcus pneumoniae TIGR4

51.835

100

0.518