Detailed information NTG0852194

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: QYR57_RS00575
• Genome accession: NZ_CP129327
• Coordinates: 94139..95155 (+)
• Length: 338 a.a.
• NCBI ID: WP_003098804.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain Si 4-21
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 89139..100155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR57_RS00565 (QYR57_00565)	-	92821..93186 (+)	366	WP_003098799.1	DUF1033 family protein	-
QYR57_RS00570 (QYR57_00570)	comYA	93247..94188 (+)	942	WP_367561726.1	competence type IV pilus ATPase ComGA	Machinery gene
QYR57_RS00575 (QYR57_00575)	comYB	94139..95155 (+)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
QYR57_RS00580 (QYR57_00580)	comGC/cglC	95156..95482 (+)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
QYR57_RS00585 (QYR57_00585)	comGD	95442..95870 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
QYR57_RS00590 (QYR57_00590)	comGE	95878..96135 (+)	258	WP_003098809.1	competence type IV pilus minor pilin ComGE	-
QYR57_RS00595 (QYR57_00595)	comGF	96164..96544 (+)	381	WP_367562091.1	competence type IV pilus minor pilin ComGF	-
QYR57_RS00600 (QYR57_00600)	comGG	96534..96887 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
QYR57_RS00605 (QYR57_00605)	comYH	96949..97905 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
QYR57_RS00610 (QYR57_00610)	-	97962..99158 (+)	1197	WP_367561727.1	acetate kinase	-
QYR57_RS00615 (QYR57_00615)	-	99281..99484 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
QYR57_RS00620 (QYR57_00620)	-	99497..99949 (+)	453	WP_003098820.1	hypothetical protein	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 39194.38 Da
• Isoelectric Point: 9.6521

>NTDB_id=852194 QYR57_RS00575 WP_003098804.1 94139..95155(+) (comYB) [Streptococcus iniae strain Si 4-21]
MDISLSKKSKQRKLSAKKQYQLMQLFHNLFASGFSLSEIVAFLEKSHLLEAKYLDRIKENLISGRSLAEMTRSLGYPDSI
VTQISFADIHGNTKESLFKIMHYLDKVAQVRKKTLEVLTYPLILLSFLIAIMFGLRHYLLPQIEESNGLTQFLTYFPLVF
LIFLILGLLLTFYLSIRWRKHSQLKQVKQFSRIPFLKDYISLYITAYFAREWGSLMGQGLELSSILTVMAKEQSPLVKEI
GQDMQAYFLEGGALHDKVLQYPFFQKELSLMIEYGDIKAKLGQELEIYAQLTWERFFSRLFQATQWIQPIIFLFVALIIV
CIYAAMLLPMYHSIGGSI

Nucleotide

• Length: 1017 bp

>NTDB_id=852194 QYR57_RS00575 WP_003098804.1 94139..95155(+) (comYB) [Streptococcus iniae strain Si 4-21]
ATGGATATCTCACTGAGCAAGAAATCCAAACAGAGAAAATTATCAGCTAAAAAGCAGTATCAATTAATGCAACTCTTTCA
TAATTTATTTGCAAGTGGTTTTAGCTTATCTGAAATAGTGGCATTTTTAGAAAAAAGTCACTTATTGGAAGCAAAATACC
TTGATAGAATAAAAGAAAACCTCATCAGTGGACGAAGTTTAGCAGAAATGACTAGAAGTTTAGGTTATCCTGACAGTATT
GTAACGCAAATTAGTTTTGCAGATATTCATGGCAATACCAAGGAAAGCTTGTTTAAAATTATGCATTACCTTGATAAAGT
GGCACAAGTCAGGAAAAAAACATTAGAAGTCCTAACTTATCCTCTTATTTTGCTTAGTTTTTTAATAGCCATCATGTTTG
GCTTACGCCATTATCTGCTTCCTCAAATAGAGGAGTCTAATGGGCTTACTCAATTTTTGACTTACTTCCCTTTAGTTTTT
TTGATTTTCTTAATATTGGGATTGCTACTCACATTTTACTTGAGCATTAGGTGGCGAAAACACTCACAATTAAAACAAGT
CAAGCAGTTTAGTCGGATACCTTTTTTAAAAGACTATATTAGCCTATATATAACTGCCTATTTTGCGCGTGAATGGGGAA
GTTTAATGGGACAAGGCCTTGAGTTGAGTTCAATACTAACCGTTATGGCAAAAGAACAATCTCCTCTGGTAAAAGAAATC
GGCCAAGATATGCAGGCCTATTTTTTAGAGGGTGGTGCTTTGCATGACAAAGTGTTACAATACCCATTTTTTCAAAAGGA
ATTAAGCTTAATGATTGAATATGGAGATATCAAGGCTAAATTAGGTCAAGAATTAGAAATTTATGCTCAACTAACATGGG
AAAGATTCTTTAGCCGCTTATTTCAAGCGACACAATGGATTCAACCTATTATATTCTTATTTGTTGCACTTATTATTGTG
TGCATTTACGCGGCAATGCTTTTGCCCATGTATCATTCAATTGGAGGTTCTATATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (24-141)

• Type II secretion system (T2SS), protein F (T2SSF) (208-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	52.252	98.521	0.515
comYB	Streptococcus mutans UA159	52.252	98.521	0.515
comGB/cglB	Streptococcus mitis NCTC 12261	48.673	100	0.488
comGB/cglB	Streptococcus mitis SK321	48.204	98.817	0.476
comYB	Streptococcus gordonii str. Challis substr. CH1	48.048	98.521	0.473
comGB/cglB	Streptococcus pneumoniae Rx1	46.407	98.817	0.459
comGB/cglB	Streptococcus pneumoniae D39	46.407	98.817	0.459
comGB/cglB	Streptococcus pneumoniae R6	46.407	98.817	0.459
comGB/cglB	Streptococcus pneumoniae TIGR4	46.407	98.817	0.459
comGB	Lactococcus lactis subsp. cremoris KW2	43.544	98.521	0.429