Detailed information NTG0852075

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V6S33_RS04680
• Genome accession: NZ_CP145679
• Coordinates: 969529..972411 (-)
• Length: 960 a.a.
• NCBI ID: WP_000101612.1
• Uniprot ID: -
• Organism: Escherichia coli strain S1-NGR-02-A
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 964529..977411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6S33_RS04655 (V6S33_04655)	yfdX2	965076..965963 (-)	888	WP_001005473.1	heat resistance protein YfdX2	-
V6S33_RS04660 (V6S33_04660)	yfdX1	966066..966980 (-)	915	WP_001022485.1	heat resistance protein YfdX1	-
V6S33_RS04665 (V6S33_04665)	hsp20-GI	967003..967461 (-)	459	WP_001275372.1	small heat shock protein sHSP20-GI	-
V6S33_RS04670 (V6S33_04670)	-	967549..969277 (-)	1729	Protein_905	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	-
V6S33_RS04675 (V6S33_04675)	-	969338..969529 (-)	192	WP_001295707.1	hypothetical protein	-
V6S33_RS04680 (V6S33_04680)	clpC	969529..972411 (-)	2883	WP_000101612.1	heat shock survival AAA family ATPase ClpK	Regulator
V6S33_RS04685 (V6S33_04685)	hsp20	972517..973086 (-)	570	WP_000350435.1	small heat shock protein sHSP20	-
V6S33_RS04690 (V6S33_04690)	-	973121..973402 (-)	282	WP_000643628.1	helix-turn-helix domain-containing protein	-
V6S33_RS04695 (V6S33_04695)	-	973631..973894 (-)	264	WP_001295708.1	hypothetical protein	-
V6S33_RS04700 (V6S33_04700)	-	973909..974172 (+)	264	WP_001247776.1	transposase	-
V6S33_RS04705 (V6S33_04705)	-	974117..974281 (+)	165	Protein_912	transposase domain-containing protein	-
V6S33_RS04710 (V6S33_04710)	-	974499..975686 (+)	1188	Protein_913	IS256 family transposase	-
V6S33_RS04715 (V6S33_04715)	-	975695..976182 (-)	488	Protein_914	IS3 family transposase	-

Sequence

Protein

• Length: 960 a.a.
• Molecular weight: 105563.39 Da
• Isoelectric Point: 5.7134

>NTDB_id=852075 V6S33_RS04680 WP_000101612.1 969529..972411(-) (clpC) [Escherichia coli strain S1-NGR-02-A]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDATPVAA
DTDDVVDASFGEPAAAGSGAPRRRGSGLASRISEQSEALLQEAAKHAAEFGRSEVDTEHLLLALADSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMARDGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVTVPEPTVAQTIMILRGLRDTFEAHHKVSISEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVAARKQYDQAAELGKRIEAKEAELKK
LVENWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESIYGDEHALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAADEEYEKTKAEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARSAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHASARWDDKAERVVFERKEPLQTPAEPEQPDAAKATEPEQPDAAKATETPHGDAGKGSRKKKSASDAS

Nucleotide

• Length: 2883 bp

>NTDB_id=852075 V6S33_RS04680 WP_000101612.1 969529..972411(-) (clpC) [Escherichia coli strain S1-NGR-02-A]
ATGGCCAGAAAACAATGCCAGGTTTGCGGCCAACCCGCTACCGTGCGGGTGGAAGCCAATCTCAACGGTCGTCACAGCAC
CATGCTGTTGTGCGACGACCATTACCGGCAATTAGTGCGCCAGCAAAAGCGCACCGTTTCGCCGCTGGAAGCCTTGTTCG
GTTCGCGCAGCGGCCTGTTCGAGGACTTCCTCGGCAGTGACTTCTTCCGCATCGGCGACGACGCGACGCCAGTTGCCGCC
GATACCGATGACGTGGTCGATGCCTCGTTTGGCGAGCCCGCCGCCGCAGGTTCGGGTGCGCCGCGCCGTCGCGGCAGTGG
GCTGGCCAGCCGCATCAGCGAACAGTCGGAAGCCTTGTTGCAGGAGGCCGCCAAACACGCTGCCGAATTTGGCCGCTCCG
AGGTGGATACCGAACATCTGCTGCTGGCGCTGGCCGACAGCGACGTGGTCAAGACCATCCTGGGTCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGGCAGATCGAGTCTGAGGCCAAGCGCGGGGACAAGCCCTTCGAGGGCGAGATCGGCGTGTCGCC
GCGCGTGAAGGATGCGCTCAGCCGCGCCTTCGTGGCCTCCAATGAACTCGGCCATTCTTATGTCGGTCCAGAGCATTTCC
TGATTGGTCTGGCCGAGGAAGGCGAAGGGCTGGCCGCCAACCTGCTGCGCCGCTACGGCCTGACGCCGCAGGCGCTGCGC
CAACAGGTCAGCAAGGTGGTCGGCAAGGGCGCCGAGGATGGACGCGCTGAGACGCCGACCAACACGCCAGAACTCGACAA
GTACTCGCGCGACCTGACCAAGATGGCGCGCGACGGCAAGCTCGACCCGGTGATCGGCCGCGCGCAGGAGATCGAAACCA
CCATCGAGGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCGGGTGTGGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTGGCGGGTGAAGTGCCCGAGACCTTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
CGCCATGGTGGCCGGCGCCAAATATCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTGAAGGAGGTGACCGAGCACC
AGGGCGAGCTGATTTTGTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGCGGTGGCGAAGGCGGGCTGGAC
GTGGCCAACGTATTCAAACCGATGATGGCGCGCGGTGAACTCAACCTGATCGGCGCCACGACGCTGAACGAGTACCAGAA
ATACATCGAGAAGGATGCCGCACTGGAGCGGCGCTTCCAGCCGGTGACGGTGCCCGAGCCGACGGTGGCCCAGACCATCA
TGATTCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCTCCGAGGACGCGATCATCGCGGCGGCC
GAGTTGTCCGACCGCTACATCACGGCGCGCTTCCTGCCGGACAAGGCGATCGACCTGCTCGACCAGGCGGCCGCGCGCGT
GAAGCTGTCGGCCACGGCCCGGCCGGTGGCCGTGCAGGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAACAGGATT
ACGTGGCCGCGCGCAAGCAGTACGACCAGGCCGCCGAGCTCGGCAAGCGCATCGAAGCCAAGGAGGCCGAGCTCAAGAAG
CTCGTCGAGAACTGGGAGCGGGAGCGGGCCTCCGGCAGTGCAGAGGTCAAGGCGGAACACGTGGCGCAGATCGTCTCGCG
CCTGACCGGCATCCCGGTCAACGAGTTGACGGTGGAAGAGCGCGAAAAGCTGCTGCACTTGGAACAACGGCTGCACGAGC
GCCTGGTGGGACAAGACGAGGCGGTCCGTGCCGTGGCCGATGCCGTGCGGCTGTCCCGCGCCGGCCTGCGCGAAGGCAGC
AAACCGGTGGCTACCTTCCTGTTTCTGGGCCCGACCGGGGTGGGCAAGACCGAGCTCGCCAAGGCATTGGCCGAATCGAT
CTACGGCGATGAGCACGCCCTGTTGCGCATCGACATGTCGGAATATGGCGAACGCCATACCGTGGCGCGGCTGGTGGGCG
CGCCTCCGGGCTATGTCGGTTACGACGAAGGCGGTCAGCTCACCGAGAAGGTGCGGCGCAAGCCCTACAGCGTGCTGCTG
CTCGACGAGATCGAGAAGGCACACCCTGACGTCTACAACATCCTGCTGCAAGTGTTCGACGACGGTCGCCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAACACCATCATCATCGCCACGTCCAACCTGGGTTCGGACATCATCCAGCGACGGC
TGAAGGCGCGTGGGGCGGCCGACGAGGAGTACGAAAAGACCAAGGCCGAGGTCATGGACGTGCTGCGCGGCCACTTCCGG
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGTAAGGAGGAGATCCGCCACATCGTCGGCCT
GCAGCTCGATCGCGTGGCGCGCAGCGCCGCCAGCCAGGGCGTGACGCTCACTTTCGATCAGACGCTGATCGACCATTTCG
CGGAAGAAGGCTACAAACCCGAGTTCGGTGCGCGTGAACTCAAGCGCCTGATCCGCAGCGAGCTGGAAACTGCGCTGGCG
CGCGAGATGCTCGGTGGCGGCATCGGCAAGGGCGATCACGCCAGCGCACGCTGGGACGACAAGGCCGAACGCGTGGTGTT
CGAACGCAAAGAGCCACTGCAGACCCCGGCCGAGCCGGAGCAGCCGGATGCCGCGAAGGCGACCGAGCCGGAGCAGCCGG
ATGCCGCGAAGGCGACCGAGACGCCGCACGGCGACGCTGGCAAAGGCTCGCGCAAGAAGAAGTCGGCGAGCGACGCATCT
TGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (307-428)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.569	82.396	0.417
clpC	Streptococcus thermophilus LMD-9	42.581	86.354	0.368
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.28	84.479	0.366
clpC	Streptococcus thermophilus LMG 18311	42.494	86.042	0.366