Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   V6S35_RS01420 Genome accession   NZ_CP145668
Coordinates   288258..289268 (+) Length   336 a.a.
NCBI ID   WP_273684539.1    Uniprot ID   -
Organism   Escherichia coli strain S1-CHI-01-A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 283258..294268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S35_RS01390 (V6S35_01390) nudB 284982..285434 (+) 453 WP_076611058.1 dihydroneopterin triphosphate diphosphatase -
  V6S35_RS01395 (V6S35_01395) yebC 285463..286203 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  V6S35_RS01400 (V6S35_01400) ruvC 286238..286759 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  V6S35_RS01405 (V6S35_01405) yebB 286761..287363 (-) 603 WP_001024936.1 YebB family permuted papain-like enzyme -
  V6S35_RS01410 (V6S35_01410) yobI 287434..287499 (+) 66 WP_072123646.1 stress response small protein YobI -
  V6S35_RS01415 (V6S35_01415) ruvA 287638..288249 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  V6S35_RS01420 (V6S35_01420) ruvB 288258..289268 (+) 1011 WP_273684539.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  V6S35_RS01425 (V6S35_01425) znuB 289420..290205 (-) 786 WP_000571478.1 zinc ABC transporter permease subunit ZnuB -
  V6S35_RS01430 (V6S35_01430) znuC 290202..290957 (-) 756 WP_000202988.1 zinc ABC transporter ATP-binding protein ZnuC -
  V6S35_RS01435 (V6S35_01435) znuA 291036..291968 (+) 933 WP_001376899.1 zinc ABC transporter substrate-binding protein ZnuA -
  V6S35_RS01440 (V6S35_01440) mepM 291984..293306 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37198.82 Da        Isoelectric Point: 4.7818

>NTDB_id=851904 V6S35_RS01420 WP_273684539.1 288258..289268(+) (ruvB) [Escherichia coli strain S1-CHI-01-A]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRNARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TVRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=851904 V6S35_RS01420 WP_273684539.1 288258..289268(+) (ruvB) [Escherichia coli strain S1-CHI-01-A]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCCGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAACGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCTGATATCGCTGCTCAGGCGCTGGATATGCTGAATGTCGATGCCGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGCCTGGATAACCTGGCGGCTGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACAGTGCGGGCGTGGAACCACTTCGGCATCACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

52.941

96.131

0.509
  ruvB Helicobacter pylori 26695

52.366

94.345

0.494