Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLD17_RS12345 Genome accession   NZ_CP129182
Coordinates   2252829..2253017 (-) Length   62 a.a.
NCBI ID   WP_014573336.1    Uniprot ID   -
Organism   Lactococcus cremoris strain D.1.7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2246041..2255519 2252829..2253017 within 0


Gene organization within MGE regions


Location: 2246041..2255519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLD17_RS12310 (LLD17_12360) - 2248755..2249564 (-) 810 WP_011677177.1 metal ABC transporter permease -
  LLD17_RS12315 (LLD17_12365) - 2249557..2250294 (-) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  LLD17_RS12320 (LLD17_12370) - 2250473..2251315 (-) 843 WP_011677179.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LLD17_RS12325 (LLD17_12375) - 2251312..2251749 (-) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  LLD17_RS12330 (LLD17_12380) comGG 2251829..2252056 (-) 228 WP_228764408.1 competence protein ComGG Machinery gene
  LLD17_RS12335 (LLD17_12385) comGF 2252152..2252577 (-) 426 WP_014735174.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLD17_RS12340 (LLD17_12390) comGE 2252561..2252797 (-) 237 WP_014573335.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLD17_RS12345 (LLD17_12395) comGD 2252829..2253017 (-) 189 WP_014573336.1 hypothetical protein Machinery gene
  LLD17_RS12350 (LLD17_12400) comGC 2253219..2253596 (-) 378 Protein_2265 competence type IV pilus major pilin ComGC -
  LLD17_RS12355 (LLD17_12405) comGB 2253614..2254639 (-) 1026 WP_050574185.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLD17_RS12360 (LLD17_12410) comGA 2254539..2255519 (-) 981 WP_162494683.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7336.65 Da        Isoelectric Point: 8.3463

>NTDB_id=851413 LLD17_RS12345 WP_014573336.1 2252829..2253017(-) (comGD) [Lactococcus cremoris strain D.1.7]
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=851413 LLD17_RS12345 WP_014573336.1 2252829..2253017(-) (comGD) [Lactococcus cremoris strain D.1.7]
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

93.548

100

0.935
  comYD Streptococcus mutans UA140

43.396

85.484

0.371
  comYD Streptococcus mutans UA159

43.396

85.484

0.371