Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   FLY89_RS17760 Genome accession   NZ_AP024415
Coordinates   3671657..3672397 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain NIPH17_0019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3666657..3677397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLY89_RS17740 (KHAB170019_35390) aroB 3667288..3668370 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  FLY89_RS17745 (KHAB170019_35400) aroK 3668399..3668968 (-) 570 WP_000643712.1 shikimate kinase AroK -
  FLY89_RS17750 pilQ 3668980..3671051 (-) 2072 Protein_3484 type IV pilus secretin PilQ -
  FLY89_RS17755 (KHAB170019_35440) pilP 3671119..3671646 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  FLY89_RS17760 (KHAB170019_35450) pilO 3671657..3672397 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  FLY89_RS17765 (KHAB170019_35460) pilN 3672394..3673035 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  FLY89_RS17770 (KHAB170019_35470) pilM 3673035..3674093 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  FLY89_RS17775 ponA 3674256..3676758 (+) 2503 Protein_3489 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=85141 FLY89_RS17760 WP_000076101.1 3671657..3672397(-) (pilO) [Acinetobacter baumannii strain NIPH17_0019]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=85141 FLY89_RS17760 WP_000076101.1 3671657..3672397(-) (pilO) [Acinetobacter baumannii strain NIPH17_0019]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment