Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FLY89_RS17765 Genome accession   NZ_AP024415
Coordinates   3672394..3673035 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain NIPH17_0019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3667394..3678035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLY89_RS17745 (KHAB170019_35400) aroK 3668399..3668968 (-) 570 WP_000643712.1 shikimate kinase AroK -
  FLY89_RS17750 pilQ 3668980..3671051 (-) 2072 Protein_3484 type IV pilus secretin PilQ -
  FLY89_RS17755 (KHAB170019_35440) pilP 3671119..3671646 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  FLY89_RS17760 (KHAB170019_35450) pilO 3671657..3672397 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  FLY89_RS17765 (KHAB170019_35460) pilN 3672394..3673035 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  FLY89_RS17770 (KHAB170019_35470) pilM 3673035..3674093 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  FLY89_RS17775 ponA 3674256..3676758 (+) 2503 Protein_3489 penicillin-binding protein PBP1a -
  FLY89_RS17780 (KHAB170019_35500) - 3676776..3677600 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  FLY89_RS17785 (KHAB170019_35510) - 3677603..3677935 (-) 333 WP_000169594.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=85142 FLY89_RS17765 WP_000201227.1 3672394..3673035(-) (pilN) [Acinetobacter baumannii strain NIPH17_0019]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=85142 FLY89_RS17765 WP_000201227.1 3672394..3673035(-) (pilN) [Acinetobacter baumannii strain NIPH17_0019]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment