Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLD17_RS10075 Genome accession   NZ_CP129182
Coordinates   1829694..1830677 (-) Length   327 a.a.
NCBI ID   WP_032950503.1    Uniprot ID   A0A1V0PIB8
Organism   Lactococcus cremoris strain D.1.7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1824694..1835677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLD17_RS10060 (LLD17_10095) - 1826046..1826972 (-) 927 WP_032950507.1 peptidyl-prolyl cis-trans isomerase -
  LLD17_RS10065 (LLD17_10100) - 1827128..1827811 (-) 684 WP_011676723.1 O-methyltransferase -
  LLD17_RS10070 (LLD17_10105) pepF 1827814..1829619 (-) 1806 WP_081196818.1 oligoendopeptidase F Regulator
  LLD17_RS10075 (LLD17_10110) coiA 1829694..1830677 (-) 984 WP_032950503.1 competence protein CoiA Machinery gene
  LLD17_RS10080 (LLD17_10115) - 1830752..1831837 (-) 1086 WP_081196819.1 YdcF family protein -
  LLD17_RS10085 (LLD17_10120) - 1831991..1832578 (-) 588 WP_014572239.1 alpha/beta hydrolase -
  LLD17_RS10090 (LLD17_10125) - 1832617..1832853 (-) 237 WP_250638220.1 alpha/beta hydrolase -
  LLD17_RS10095 (LLD17_10130) - 1833046..1834467 (-) 1422 WP_011676727.1 NCS2 family permease -
  LLD17_RS10100 (LLD17_10135) - 1834774..1835610 (+) 837 WP_011676728.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39121.86 Da        Isoelectric Point: 9.7664

>NTDB_id=851395 LLD17_RS10075 WP_032950503.1 1829694..1830677(-) (coiA) [Lactococcus cremoris strain D.1.7]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=851395 LLD17_RS10075 WP_032950503.1 1829694..1830677(-) (coiA) [Lactococcus cremoris strain D.1.7]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0PIB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

97.248

100

0.972
  coiA Streptococcus mitis NCTC 12261

44.444

99.083

0.44
  coiA Streptococcus pneumoniae TIGR4

43.21

99.083

0.428
  coiA Streptococcus pneumoniae Rx1

43.21

99.083

0.428
  coiA Streptococcus pneumoniae D39

43.21

99.083

0.428
  coiA Streptococcus pneumoniae R6

43.21

99.083

0.428