NTDB

Overview

Name	coiA	Type	Machinery gene
Locus tag	LLUC029_RS03855	Genome accession	NZ_CP129163
Coordinates	747024..748007 (+)	Length	327 a.a.
NCBI ID	WP_032950503.1	Uniprot ID	A0A1V0PIB8
Organism	Lactococcus cremoris strain UC029
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 742024..753007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUC029_RS03830 (LLUC029_03835)	-	742509..743444 (+)	936	WP_031559015.1	IS30 family transposase	-
LLUC029_RS03835 (LLUC029_03840)	-	743566..743763 (+)	198	WP_250638141.1	alpha/beta hydrolase	-
LLUC029_RS03840 (LLUC029_03845)	-	743802..744389 (+)	588	WP_250638196.1	alpha/beta hydrolase	-
LLUC029_RS03845 (LLUC029_03850)	-	744528..745703 (-)	1176	WP_003138385.1	IS256-like element IS905 family transposase	-
LLUC029_RS03850 (LLUC029_03855)	-	745864..746949 (+)	1086	WP_014572240.1	YdcF family protein	-
LLUC029_RS03855 (LLUC029_03860)	coiA	747024..748007 (+)	984	WP_032950503.1	competence protein CoiA	Machinery gene
LLUC029_RS03860 (LLUC029_03865)	pepF	748082..749887 (+)	1806	WP_032950505.1	oligoendopeptidase F	Regulator
LLUC029_RS03865 (LLUC029_03870)	-	749890..750573 (+)	684	WP_011676723.1	O-methyltransferase	-
LLUC029_RS03870 (LLUC029_03875)	-	750729..751655 (+)	927	WP_032950507.1	peptidyl-prolyl cis-trans isomerase	-

Sequence

Protein

Download Length: 327 a.a. Molecular weight: 39121.86 Da Isoelectric Point: 9.7664

                                >NTDB_id=851336 LLUC029_RS03855 WP_032950503.1 747024..748007(+) (coiA) [Lactococcus cremoris strain UC029]

MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQHLGLKKILYQWFKRT

DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR

GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK

WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM

GKQKKEK

Nucleotide

Download Length: 984 bp

                                >NTDB_id=851336 LLUC029_RS03855 WP_032950503.1 747024..748007(+) (coiA) [Lactococcus cremoris strain UC029]

ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA

TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA

GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT

GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA

GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT

GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA

GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG

AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA

AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA

TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC

ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC

TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG

GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1V0PIB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
coiA	Lactococcus lactis subsp. cremoris KW2	97.248	100	0.972
coiA	Streptococcus mitis NCTC 12261	44.444	99.083	0.44
coiA	Streptococcus pneumoniae TIGR4	43.21	99.083	0.428
coiA	Streptococcus pneumoniae Rx1	43.21	99.083	0.428
coiA	Streptococcus pneumoniae D39	43.21	99.083	0.428
coiA	Streptococcus pneumoniae R6	43.21	99.083	0.428

Detailed information NTG0851336