Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V6S44_RS07655 Genome accession   NZ_CP145634
Coordinates   1571174..1571911 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain S1-JOR-02-A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1566174..1576911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S44_RS07640 (V6S44_07640) clpC 1566628..1569201 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  V6S44_RS07645 (V6S44_07645) yfiH 1569331..1570062 (-) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  V6S44_RS07650 (V6S44_07650) rluD 1570059..1571039 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6S44_RS07655 (V6S44_07655) comL 1571174..1571911 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  V6S44_RS07660 (V6S44_07660) - 1572015..1573361 (+) 1347 WP_000483766.1 IS4-like element IS4 family transposase -
  V6S44_RS07665 (V6S44_07665) raiA 1573622..1573963 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  V6S44_RS07670 (V6S44_07670) pheL 1574067..1574114 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  V6S44_RS07675 (V6S44_07675) pheA 1574213..1575373 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  V6S44_RS07680 (V6S44_07680) tyrA 1575416..1576537 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=851336 V6S44_RS07655 WP_000197686.1 1571174..1571911(+) (comL) [Escherichia coli strain S1-JOR-02-A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=851336 V6S44_RS07655 WP_000197686.1 1571174..1571911(+) (comL) [Escherichia coli strain S1-JOR-02-A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376