Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LLNCDO702_RS12020 Genome accession   NZ_CP129159
Coordinates   2391734..2392234 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain NCDO702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2386734..2397234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO702_RS11995 (LLNCDO702_11980) gnd 2387798..2388703 (-) 906 WP_032398514.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  LLNCDO702_RS12000 (LLNCDO702_11985) - 2389067..2389915 (+) 849 WP_003131770.1 MurR/RpiR family transcriptional regulator -
  LLNCDO702_RS12005 (LLNCDO702_11990) - 2389953..2390261 (+) 309 WP_014570833.1 DUF960 domain-containing protein -
  LLNCDO702_RS12010 (LLNCDO702_11995) - 2390343..2391116 (-) 774 WP_003131951.1 metallophosphoesterase -
  LLNCDO702_RS12015 (LLNCDO702_12000) rpsR 2391316..2391561 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  LLNCDO702_RS12020 (LLNCDO702_12005) ssb 2391734..2392234 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  LLNCDO702_RS12025 (LLNCDO702_12010) rpsF 2392264..2392557 (-) 294 WP_003131954.1 30S ribosomal protein S6 -
  LLNCDO702_RS12030 (LLNCDO702_12015) - 2392749..2393603 (-) 855 WP_003131955.1 undecaprenyl-diphosphate phosphatase -
  LLNCDO702_RS12035 (LLNCDO702_12020) - 2394126..2395592 (+) 1467 WP_003131956.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=851320 LLNCDO702_RS12020 WP_003131953.1 2391734..2392234(-) (ssb) [Lactococcus lactis subsp. lactis strain NCDO702]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=851320 LLNCDO702_RS12020 WP_003131953.1 2391734..2392234(-) (ssb) [Lactococcus lactis subsp. lactis strain NCDO702]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373