Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QWI19_RS21020 Genome accession   NZ_CP129123
Coordinates   4055233..4055751 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain 6D1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4050233..4060751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS20990 yyaJ 4050737..4052092 (+) 1356 WP_015250786.1 MFS transporter -
  QWI19_RS20995 maa 4052126..4052680 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  QWI19_RS21000 yyaH 4052696..4053076 (-) 381 WP_015250784.1 VOC family protein -
  QWI19_RS21005 ccpB 4053132..4054067 (-) 936 WP_015250783.1 transcriptional regulator CcpB -
  QWI19_RS21010 xth 4054126..4054884 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  QWI19_RS21015 rpsR 4054950..4055189 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  QWI19_RS21020 ssbA 4055233..4055751 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  QWI19_RS21025 rpsF 4055792..4056079 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  QWI19_RS21030 ychF 4056190..4057290 (-) 1101 WP_015250781.1 redox-regulated ATPase YchF -
  QWI19_RS21035 yyaE 4057417..4059420 (-) 2004 WP_044052400.1 molybdopterin-dependent oxidoreductase -
  QWI19_RS21040 yyzM 4059471..4059677 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=851245 QWI19_RS21020 WP_003219228.1 4055233..4055751(-) (ssbA) [Bacillus subtilis strain 6D1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=851245 QWI19_RS21020 WP_003219228.1 4055233..4055751(-) (ssbA) [Bacillus subtilis strain 6D1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378