Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | QU610_RS00215 | Genome accession | NZ_CP129105 |
| Coordinates | 38818..39954 (+) | Length | 378 a.a. |
| NCBI ID | WP_137296253.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain HP45k | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 33818..44954
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QU610_RS00180 (QU610_00180) | panD | 34272..34625 (+) | 354 | WP_000142239.1 | aspartate 1-decarboxylase | - |
| QU610_RS00185 (QU610_00185) | - | 34628..34930 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| QU610_RS00190 (QU610_00190) | - | 34930..35925 (+) | 996 | WP_137296274.1 | PDZ domain-containing protein | - |
| QU610_RS00195 (QU610_00195) | comB6 | 35933..36988 (+) | 1056 | WP_137296273.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| QU610_RS00200 (QU610_00200) | comB7 | 37004..37117 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| QU610_RS00205 (QU610_00205) | comB8 | 37114..37857 (+) | 744 | WP_137296255.1 | virB8 family protein | Machinery gene |
| QU610_RS00210 (QU610_00210) | comB9 | 37857..38825 (+) | 969 | WP_137296254.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| QU610_RS00215 (QU610_00215) | comB10 | 38818..39954 (+) | 1137 | WP_137296253.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| QU610_RS00220 (QU610_00220) | - | 40024..41436 (+) | 1413 | WP_137296252.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| QU610_RS00225 (QU610_00225) | gmd | 41471..42616 (+) | 1146 | WP_137296251.1 | GDP-mannose 4,6-dehydratase | - |
| QU610_RS00230 (QU610_00230) | - | 42609..43541 (+) | 933 | WP_137296250.1 | GDP-L-fucose synthase | - |
| QU610_RS00235 (QU610_00235) | - | 43566..43694 (-) | 129 | WP_212713493.1 | anthranilate synthase component I | - |
| QU610_RS00240 (QU610_00240) | - | 43887..44255 (-) | 369 | WP_212713491.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42145.90 Da Isoelectric Point: 10.0478
>NTDB_id=850865 QU610_RS00215 WP_137296253.1 38818..39954(+) (comB10) [Helicobacter pylori strain HP45k]
MNKWLKGAIVFIGGFATITTISLVYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPAESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKSPPMDLKTKPTPPKKDFSLKQLDLLAARITPFKQGPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFIGGFATITTISLVYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPAESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKSPPMDLKTKPTPPKKDFSLKQLDLLAARITPFKQGPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=850865 QU610_RS00215 WP_137296253.1 38818..39954(+) (comB10) [Helicobacter pylori strain HP45k]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAACCTTTTGAATGACGATGAGGTGAAATACCCTTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCCCTGCAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAAACCAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAG
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAATAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCCACTCTTACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTTTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAAAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAACCTTTTGAATGACGATGAGGTGAAATACCCTTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCCCTGCAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAAACCAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAG
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAATAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCCACTCTTACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTTTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAAAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.825 |
100 |
0.968 |