Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QU610_RS00205 Genome accession   NZ_CP129105
Coordinates   37114..37857 (+) Length   247 a.a.
NCBI ID   WP_137296255.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP45k     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32114..42857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU610_RS00180 (QU610_00180) panD 34272..34625 (+) 354 WP_000142239.1 aspartate 1-decarboxylase -
  QU610_RS00185 (QU610_00185) - 34628..34930 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  QU610_RS00190 (QU610_00190) - 34930..35925 (+) 996 WP_137296274.1 PDZ domain-containing protein -
  QU610_RS00195 (QU610_00195) comB6 35933..36988 (+) 1056 WP_137296273.1 P-type conjugative transfer protein TrbL Machinery gene
  QU610_RS00200 (QU610_00200) comB7 37004..37117 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  QU610_RS00205 (QU610_00205) comB8 37114..37857 (+) 744 WP_137296255.1 virB8 family protein Machinery gene
  QU610_RS00210 (QU610_00210) comB9 37857..38825 (+) 969 WP_137296254.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QU610_RS00215 (QU610_00215) comB10 38818..39954 (+) 1137 WP_137296253.1 DNA type IV secretion system protein ComB10 Machinery gene
  QU610_RS00220 (QU610_00220) - 40024..41436 (+) 1413 WP_137296252.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QU610_RS00225 (QU610_00225) gmd 41471..42616 (+) 1146 WP_137296251.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28757.05 Da        Isoelectric Point: 9.2316

>NTDB_id=850863 QU610_RS00205 WP_137296255.1 37114..37857(+) (comB8) [Helicobacter pylori strain HP45k]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEYLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=850863 QU610_RS00205 WP_137296255.1 37114..37857(+) (comB8) [Helicobacter pylori strain HP45k]
ATGAAAGAAAAGCCTTTCAACAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGCATTCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTGAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAATATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTTCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98