Detailed information NTG0850861

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QU610_RS00195
• Genome accession: NZ_CP129105
• Coordinates: 35933..36988 (+)
• Length: 351 a.a.
• NCBI ID: WP_137296273.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP45k
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 30933..41988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QU610_RS00165 (QU610_00165)	-	31346..31759 (+)	414	WP_001023008.1	universal stress protein	-
QU610_RS00170 (QU610_00170)	-	31782..32057 (+)	276	WP_137296257.1	ATP-dependent Clp protease adaptor ClpS	-
QU610_RS00175 (QU610_00175)	-	32057..34282 (+)	2226	WP_137296256.1	ATP-dependent Clp protease ATP-binding subunit	-
QU610_RS00180 (QU610_00180)	panD	34272..34625 (+)	354	WP_000142239.1	aspartate 1-decarboxylase	-
QU610_RS00185 (QU610_00185)	-	34628..34930 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
QU610_RS00190 (QU610_00190)	-	34930..35925 (+)	996	WP_137296274.1	PDZ domain-containing protein	-
QU610_RS00195 (QU610_00195)	comB6	35933..36988 (+)	1056	WP_137296273.1	P-type conjugative transfer protein TrbL	Machinery gene
QU610_RS00200 (QU610_00200)	comB7	37004..37117 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
QU610_RS00205 (QU610_00205)	comB8	37114..37857 (+)	744	WP_137296255.1	virB8 family protein	Machinery gene
QU610_RS00210 (QU610_00210)	comB9	37857..38825 (+)	969	WP_137296254.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QU610_RS00215 (QU610_00215)	comB10	38818..39954 (+)	1137	WP_137296253.1	DNA type IV secretion system protein ComB10	Machinery gene
QU610_RS00220 (QU610_00220)	-	40024..41436 (+)	1413	WP_137296252.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39747.67 Da
• Isoelectric Point: 8.5786

>NTDB_id=850861 QU610_RS00195 WP_137296273.1 35933..36988(+) (comB6) [Helicobacter pylori strain HP45k]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRGVVAACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=850861 QU610_RS00195 WP_137296273.1 35933..36988(+) (comB6) [Helicobacter pylori strain HP45k]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTCAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGGGCGTTGTGGCTGCGTGTTTAAAAAAATGCTTCGCTCTTGGTTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAATGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974